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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT11_ARATH
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRFLLMLLF PFSDNRPMMF FRSFIVFFFL IFFASNVSSR KQTYVIHTVT TSTKHIVTSL  60
   61 FNSLQTENIN DDDFSLPEIH YIYENAMSGF SATLTDDQLD TVKNTKGFIS AYPDELLSLH 120
  121 TTYSHEFLGL EFGIGLWNET SLSSDVIIGL VDTGISPEHV SFRDTHMTPV PSRWRGSCDE 180
  181 GTNFSSSECN KKIIGASAFY KGYESIVGKI NETTDFRSTR DAQGHGTHTA STAAGDIVPK 240
  241 ANYFGQAKGL ASGMRFTSRI AAYKACWALG CASTDVIAAI DRAILDGVDV ISLSLGGSSR 300
  301 PFYVDPIAIA GFGAMQKNIF VSCSAGNSGP TASTVSNGAP WLMTVAASYT DRTFPAIVRI 360
  361 GNRKSLVGSS LYKGKSLKNL PLAFNRTAGE ESGAVFCIRD SLKRELVEGK IVICLRGASG 420
  421 RTAKGEEVKR SGGAAMLLVS TEAEGEELLA DPHVLPAVSL GFSDGKTLLN YLAGAANATA 480
  481 SVRFRGTAYG ATAPMVAAFS SRGPSVAGPE IAKPDIAAPG LNILAGWSPF SSPSLLRSDP 540
  541 RRVQFNIISG TSMACPHISG IAALIKSVHG DWSPAMIKSA IMTTARITDN RNRPIGDRGA 600
  601 AGAESAATAF AFGAGNVDPT RAVDPGLVYD TSTVDYLNYL CSLNYTSERI LLFSGTNYTC 660
  661 ASNAVVLSPG DLNYPSFAVN LVNGANLKTV RYKRTVTNVG SPTCEYMVHV EEPKGVKVRV 720
  721 EPKVLKFQKA RERLSYTVTY DAEASRNSSS SSFGVLVWIC DKYNVRSPIA VTWE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle