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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20152059
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.14
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHLQNNTSG YYMLVNMNQH MNNSEKNSII GFASNAIMVS KTFNPPPSVH GNPDSPYRNS  60
   61 CVVRFFIHQF GKNPGSINLS VVEMKEKENI TTTLWWSTKN QGSDWMRAEY VLPNITSKYY 120
  121 LQFEARMGMR IYSDVAVDDF SLSPECFGLN IPEDHLGGYN YWDVRQNLKS PTYKDFEYTN 180
  181 YLELTTCDTR GMIGPSQAQC EAAYREQNKT HVLREVHVVE DQSSYKGMQK WKVPHEGHYT 240
  241 IIAKGASGGL GSGGVGSSRG SVAVAILELH KNEELYFLVG QQGENACIKS MGVLKEAGCG 300
  301 TDHDLDLAQY SFRSKQDMVK NIYIENGAGG GGGGSYVFLL NQAKNEAVPL LVAGGGGGLG 360
  361 IGQYIDEDFQ HGQKAKPLQA PESGQINGEP LNKKTAGPGG GWRAKEDQAL SPTYGAALLQ 420
  421 GGRGGHSCYV ELADNGTSVH RHGQGGFGGG GGGCNTGGGG GGYAGGDVYL TESNGEGGSS 480
  481 YISPSRSLRE ISEIHAGASS GPGAIIIIPA IEGCGCDYRC VALDEFRSKV RCICPDGWSL 540
  541 KRDNHTACEI REEAGKSSFQ YLVSILMISL AVLFICIAAL IFMLYNRYQR KKQSKKRHKM 600
  601 LVEQDLQLTR LRNNIDDSNL NNFNPNYGCD GILNGHIDVN SLPQVARDSL QLVNALGKGA 660
  661 FGEVYMALYR HRDGDAVEMG VAVKTLREDP KREKEEDFLK EAAIMAKFNH PNMVHLIGVC 720
  721 FDRQPYYIVL ELLAGGDLQK FLRENRNTPE RPSLLTMKDL LFCALDVAKG CRYMESKRFI 780
  781 HRDIAARNCL LSSKGPGRVV KIADFGMSRD IYRSDYYRKG GKAMLPIKWM PPEAFLDGIF 840
  841 TSKTDVWSFG ILLWEVFSLG RSPYPGQHNT QVMELVVRGG RLGSPTECPV SIYKVMADCW 900
  901 NPTPEDRPTF ITLLEHLTAC TQDASIMNAP LPNILGPTAS ERDDTVIRPP NGEEFCLAVP 960
  961 DYLVPLPPGG SNNPSMASGS GYVPELQRQQ MSSCTPPAVT SPAAPHPRPV ENIAPTSGDC1020
 1021 WETSFILPNS KVEPPVVGSG HDVPLAGGEE AKLISLDTPQ PTPTTIQPPL SFASQLDGIT1080
 1081 LDPSALTKSL PNGNAKQSYA NVQVKNEAGA KVINGVVGNG TVMNGDVSTG SGGADSPFTI1140
 1141 QCYAERYKDN NNHSEISC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle