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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20151415
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSWRSDVNS RQDRYEVHYQ RNGTREERTM ATNETSLTIH YLHPGSGYEV KVHAISHGVR  60
   61 SEPHSYFQAV FPKPPQNLTL QTVHTNLVVL HWQAPEGSDF SEYVVRYRTD ASPWQRISGL 120
  121 HENEARIKDM HYGERYLVQV NTVSFGVESP HPLELNVTMP PQPVSNVVPL VDSRNLTLEW 180
  181 PRPDGHVDFY TLKWWPTDEE DRVEFKNVTQ LEDLSSPSVR IPIEDLSPGR QYRFEVQASS 240
  241 NGIRSGTTHL STRTMPLIQS DVFIANAGHE QGQDETITLS YTPTPADSTR FDIYRFSMGD 300
  301 PTIKDKEKLA NDTERKLSFS GLTPGKLYNV TVWTVSGGVA SLPVQRLYRL HPLPISDLKA 360
  361 IQVAAREITL HWTAPAGEYT DFELQYLSAD EEAPQLLQNV TKNTEITLQG LRPYHNYTFT 420
  421 VVVRSGSIQG TDFADVSVST LMRSSAPISA SYQTLTAPPG KVDYFQPSDV QPGEVTFEWS 480
  481 LEPAEQHGPI DYFRITCQNA DDAADVSSYE FPVNATQGKI DGLVPGNHYI FRIQAKSALG 540
  541 YGAEREHIQT MPILAPPVPE PSVTPLEVSR TSSTIEISFR QGYFSNAHGM VRSYTIIIAE 600
  601 DVGKNASGLE MPSWQDVQAY TVWLPYQAIE PYNPFLTSNG SRKSSLEAEH FTIGTANCDK 660
  661 HQAGYCNGPL RAGTTYRIKI RAFTDEDKFT DTVYSSPITT ERSDTVIVAA TVSAVLLVAM 720
  721 VLVVVYCQHR CQLIRRASKL ARMQDELAAL PEGYITPNRP VHVKDFSEHY RIMSADSDFR 780
  781 FSEEFEELKH VGRDQACSFA NLPCNRPKNR FTNILPYDHS RFKLQPVDDD DGSDYINANY 840
  841 MPGHNSPREF IVTQGPLHST REEFWRMCWE SNSRAIVMLT RCFEKGREKC DQYWPVDRVA 900
  901 MFYGDIKVQL IIDTHYHDWS ISEFMVSRNC ESRIMRHFHF TTWPDFGVPE PPQSLVRFVR 960
  961 AFRDVIGTDM RPIIVHCSAG VGRSGTFIAL DRILQHIHKS DYVDIFGIVF AMRKERVFMV1020
 1021 QTETAVCVHP SVSAGGAGGQ GAPAGRFARA ARQRWLRSFI NITC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle