YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20148643, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLLPFSSP LSATSSPSTP QFIPELPPPS QFDYSGLTKI LKKSVIGTLT GALSLTLVFS  60
   61 SPISSVAATN DPYLSVNPPS SSFESSLNHF DSAPEDCPNE EEADTEIQDD DIEPQLVTNE 120
  121 GIVEEAWEIV NGAFLDTRSH SWTPETWQKQ KDDILASPIK SRSKAHEVIK NMLASLGDQY 180
  181 TRFLSPDEFS RMSKYDITGI GINLREVSDG GGNVKLKVLG LVLDSAADIA GVKQGDEILA 240
  241 VNGMDVSGKS SFEVSSLLQG PSKTFVVLKV KHGKCGPVKS LKIQRQVNAQ TPVSYRLEKV 300
  301 DNGTVSVGYI RLKEFNALAR KDLVIAMKRL LDKGASYFVM DLRDNLGGLV QAGIETAKLF 360
  361 LDEGDTVIYT AGRDPEAQKT VVSDKKPLIT APLIVCDESC KPVNLSHYYV ILHLALIRIL 420
  421 IIVAGNGK

Type	Start	End	Confidence
Signal Peptide	1	20	0.88
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	428	0.98