YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSIKPSSS SFSTAISGSV RRSIPTKLKF SPLLIIKNCH NQSFNANVVS HQKPLHISSA  60
   61 SNFKREVKVE AYEADRSRPL DINIELPDEQ SAQKLKIGIY FATWWALNVV FNIYNKKVLN 120
  121 AFPYPWLTST LSLACGSLMM LVSWATRIAD APKTDLEFWK TLFPVAVAHT IGHVAATVSM 180
  181 SKVAVSFTHI IKSGEPAFSV LVSRFFMGET FPLPVYLSLL PIIGGCALAA ITELNFNITG 240
  241 FMGAMISNLA FVFRNIFSKK GMKGKSVSGM NYYACLSMMS LVILTPFSIA VEVPQMWAAG 300
  301 WQNAVSQVGP NFVWWVVAQS VFYHLYNQVS YMSLDQISPL TFSIGNTMKR ISVIVASIII 360
  361 FHTPIQPVNA LGAAIAIFGT FLYSQAKQ

Type	Start	End	Confidence
Cytoplasmic	1	123	0.68
Transmembrane Helix	124	146	0.88
Non-Cytoplasmic	147	164	0.56
Transmembrane Helix	165	191	0.62
Cytoplasmic	192	210	0.76
Transmembrane Helix	211	231	0.90
Non-Cytoplasmic	232	237	0.77
Transmembrane Helix	238	257	0.93
Cytoplasmic	258	268	0.93
Transmembrane Helix	269	291	0.90
Non-Cytoplasmic	292	310	0.82
Transmembrane Helix	311	327	0.71
Cytoplasmic	328	350	0.59
Transmembrane Helix	351	383	0.72
Non-Cytoplasmic	384	388	0.46