YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18406673, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTMRRLGI ITLTNSAAVV TPSLLSSTAA FPGTLTLPSP LLSDRLTNSI LFHESRSLSF  60
   61 SCFSSSSSSS AAYLPSLEEY PSAKGSVKRD DNQKVVLKGM TYASLQEWVQ SHGFRPGQAL 120
  121 MLWKRLYKDN IWANNVDELE GLNKDLKRMI SEHAEFGALS FKDIRSASDG TRKILFTLDD 180
  181 GLVIETVVIP CDRGRTTVCV SSQVGCAMNC QFCYTGRMGL KRNLTTAEIV EQAVYARRLL 240
  241 SHEVGSITNV VFMGMGEPFH NIDNVIKAAN IMVDENGLHF SPRKVTVSTS GLVPQLKRFL 300
  301 RESNCALAVS LNATTDEVRN WIMPINRKYK LSLLLETLRE GLSSRHKYKV LFEYVMLAGV 360
  361 NDSMDDARRL VELVQGIPCK INLIQFNPHS GSQFIQTEED KMIKFRNVLA EGGCTVLMRF 420
  421 SRGNDQMAAC GQLGMIGAVQ APVMRVPEQF RTALKASV

Type	Start	End	Confidence
Signal Peptide	1	29	0.89
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	458	0.99