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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Nmdar2-PC
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.27
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPSRVKLKR GTDGPTPTPT PMPTTMRKHT PIATLNTASC QHNSTTSRRK RILTPPSGPI  60
   61 SLLLLTVLTL LILDTRSCQG LRLTNGGGSL SKGAAANKEQ LNIGLIAPHT NFGKREYLRS 120
  121 INNAVTGLTK TRGAKLTFLK DYSFEQKNIH FDMMSLTPSP TAILSTLCKE FLRVNVSAIL 180
  181 YMMNNEQFGH STASAQYFLQ LAGYLGIPVI SWNADNSGLE RRASQSTLQL QLAPSIEHQS 240
  241 AAMLSILERY KWHQFSVVTS QIAGHDDFVQ AVRERVAEMQ EHFKFTILNS IVVTRTSDLM 300
  301 ELVNSEARVM LLYATQTEAI TILRAAEEMK LTGENYVWVV SQSVIEKKDA HSQFPVGMLG 360
  361 VHFDTSSAAL MNEISNAIKI YSYGVEAYLT DPANRDRRLT TQSLSCEDEG RGRWDNGEIF 420
  421 FKYLRNVSIE GDLNKPNIEF TADGDLRSAE LKIMNLRPSA NNKNLVWEEI GVWKSWETQK 480
  481 LDIRDIAWPG NSHAPPQGVP EKFHLKITFL EEAPYINLSP ADPVSGKCLM DRGVLCRVAA 540
  541 DHEMAADIDV GQAHRNESFY QCCSGFCIDL LEKFAEELGF TYELVRVEDG KWGTLENGKW 600
  601 NGLIADLVNR KTDMVLTSLM INTEREAVVD FSEPFMETGI AIVVAKRTGI ISPTAFLEPF 660
  661 DTASWMLVGI VAIQAATFMI FLFEWLSPSG YDMKLYLQNT NVTPYRFSLF RTYWLVWAVL 720
  721 FQAAVHVDSP RGFTSRFMTN VWALFAVVFL AIYTANLAAF MITREEFHEF SGLNDSRLVH 780
  781 PFSHKPSFKF GTIPYSHTDS TIHKYFNVMH NYMRQYNKTS VADGVAAVLN GNLDSFIYDG 840
  841 TVLDYLVAQD EDCRLMTVGS WYAMTGYGLA FSRNSKYVQM FNKRLLEFRA NGDLERLRRY 900
  901 WMTGTCRPGK QEHKSSDPLA LEQFLSAFLL LMAGILLAAL LLLLEHVYFK YIRKRLAKKD 960
  961 GGHCCALISL SMGKSLTFRG AVFEATEILK KHRCNDPICD THLWKVKHEL DMSRLRVRQL1020
 1021 EKVMDKHGIK APQLRLASSS DLLNHHHLKE RPPLLGNLSL AASAQDLYRW SYKTEIAEME1080
 1081 TVL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle