YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHX5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.73
Transmembrane Helix	18	40	0.90
Non-Cytoplasmic	41	46	0.64
Transmembrane Helix	47	68	0.86
Cytoplasmic	69	79	0.64
Transmembrane Helix	80	99	0.79
Non-Cytoplasmic	100	111	0.66
Transmembrane Helix	112	135	0.91
Cytoplasmic	136	143	0.67
Transmembrane Helix	144	168	0.68
Non-Cytoplasmic	169	176	0.77
Transmembrane Helix	177	198	0.80
Cytoplasmic	199	216	0.88
Transmembrane Helix	217	241	0.84
Non-Cytoplasmic	242	267	0.91
Transmembrane Helix	268	288	0.92
Cytoplasmic	289	302	0.87
Transmembrane Helix	303	325	0.87
Non-Cytoplasmic	326	338	0.82
Transmembrane Helix	339	362	0.90
Cytoplasmic	363	378	0.92
Transmembrane Helix	379	399	0.91
Non-Cytoplasmic	400	405	0.86
Transmembrane Helix	406	426	0.92
Cytoplasmic	427	517	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPVEHDPQ GQVKQQQAAG VGILLQIMML VLSFVLGHVL RRHRFHYLPE ASGSLLIGLI  60
   61 VGILANISDT ETSIRTWFNF HEEFFFLFLL PPIIFQSGFS LQPKPFFSNF GAIVTFAIIG 120
  121 TFVASVVTGG LVYLGGSMYL MYKLPFVECL MFGALISATD PVTVLSIFQD VGTDVNLYAL 180
  181 VFGESVLNDA MAISLYRTMS LVNRQSSSGE HFFMVVIRFF ETFAGSMSAG VGVGFTSALL 240
  241 FKYAGLDTEN LQNLECCLFV LFPYFSYMLA EGVGLSGIVS ILFTGIVMKR YTFSNLSEAS 300
  301 QSFVSSFFHL ISSLAETFTF IYMGFDIAME QHSWSHVGFI LFSILFIGVA RAVNVFGCAY 360
  361 LVNLFRQENQ KIPMKHQKAL WYSGLRGAMA FALALQSLHD LPEGHGQIIF TATTTIVVVT 420
  421 VLLIGGSTGK MLEALEVVGD DLDDSMSEGF EESDHQYVPP PFSIGASSDE DTSSSGSRFK 480
  481 MKLKEFHKTT TSFTALDKNF LTPFFTTNSG DGDGDGE