YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598182, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFKGCSIYL TLVALSVKVV CNLSFFHCIF GTFMGKNLAR LLKQHRKSMR VFFRSKQDRF  60
   61 FSLLSLSALG ISVGMLMLVL CSIVNNGYKA LTATKILLHL DDTESIRKDS EYFREDCIKR 120
  121 IHSALDKILS SHVDLNNPET KRIAYSIVSE TAHYELADLI QKNVRISPDG LWLNASTEFL 180
  181 SGVKNNEISS VVLKTFEDQE RIKRSFFNKS LFTNSHSKVP ENAGILGALI GSLLTIIVCL 240
  241 AIAIPLGIMT GICMQELLSN NKVSSIIEIS INNLSSVPSI IFGVLGLVVY LNIFGVPRSS 300
  301 SLAGGMTLSI MILPYLILTT RQALAAVPES VKHAALSLGA TNMQVIMHHS LPIAFPALVQ 360
  361 GVLVSVARII GESSPLIMIG MVAFVIDLPK TFLDPASVLP VQIYIWANNS SAEFTKISAI 420
  421 AILALLMILL VLNMIAAFIK RRLDNFSF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.67
Transmembrane Helix	8	30	0.80
Non-Cytoplasmic	31	59	0.69
Transmembrane Helix	60	84	0.85
Cytoplasmic	85	224	0.71
Transmembrane Helix	225	249	0.87
Non-Cytoplasmic	250	273	0.65
Transmembrane Helix	274	294	0.90
Cytoplasmic	295	301	0.57
Transmembrane Helix	302	324	0.81
Non-Cytoplasmic	325	344	0.69
Transmembrane Helix	345	367	0.79
Cytoplasmic	368	374	0.55
Transmembrane Helix	375	393	0.68
Non-Cytoplasmic	394	416	0.74
Transmembrane Helix	417	439	0.90
Cytoplasmic	440	448	0.88