YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27542785
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKTRLPYV ALDVICVLLA GLPFAILTSR HTPFQRGIFC NDDSIKYPYK EDTIPYALLG  60
   61 GIVIPFCIIV MSIGESLSVY FNVLHSNSFV GNPYIATIYK AVGAFXFGVS ASQSLTDIAK 120
  121 YTIGSLRPHF LAICNPDWSK INCSDGYIED YICQGNEEKV KEGRLSFYSG HSSFSMYCML 180
  181 FVALYLQARM KGDWARLLRP MLQFGLIAFS IYVGLSRVSD YKHHWSDVTV GLIQGAAMAI 240
  241 LVALYVSDFF KDTHSYKERK EEDPHTTLHE TASSRNYSTN HEPVDGTAGP GSIATMVSKG 300
  301 EELFTGVVPI LVELDGDVNG HKFSVSGEGE GDATYGKLTL KFICTTGKLP VPWPTLVTTL 360
  361 TYGVQCFSRY PDHMKQHDFF KSAMPEGYVQ ERTIFFKDDG NYKTRAEVKF EGDTLVNRIE 420
  421 LKGIDFKEDG NILGHKLEYN YNSHNVYIMA DKQKNGIKVN FKIRHNIEDG SVQLADHYQQ 480
  481 NTPIGDGPVL LPDNHYLSTQ SALSKDPNEK RDHMVLLEFV TAAGITLGMD ELYK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.67
Transmembrane Helix	9	29	0.91
Non-Cytoplasmic	30	53	0.69
Transmembrane Helix	54	81	0.76
Cytoplasmic	82	95	0.53
Transmembrane Helix	96	115	0.56
Non-Cytoplasmic	116	166	0.53
Transmembrane Helix	167	188	0.81
Cytoplasmic	189	196	0.54
Transmembrane Helix	197	216	0.89
Non-Cytoplasmic	217	227	0.49
Transmembrane Helix	228	250	0.84
Cytoplasmic	251	534	0.59