YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EDL10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.98
Transmembrane Helix	17	38	0.91
Non-Cytoplasmic	39	59	0.88
Transmembrane Helix	60	83	0.86
Cytoplasmic	84	90	0.83
Transmembrane Helix	91	109	0.94
Non-Cytoplasmic	110	118	0.64
Transmembrane Helix	119	137	0.94
Cytoplasmic	138	145	0.84
Transmembrane Helix	146	167	0.90
Non-Cytoplasmic	168	173	0.78
Transmembrane Helix	174	193	0.97
Cytoplasmic	194	256	0.97
Transmembrane Helix	257	278	0.91
Non-Cytoplasmic	279	291	0.86
Transmembrane Helix	292	312	0.92
Cytoplasmic	313	319	0.89
Transmembrane Helix	320	341	0.94
Non-Cytoplasmic	342	353	0.83
Transmembrane Helix	354	377	0.88
Cytoplasmic	378	385	0.81
Transmembrane Helix	386	407	0.87
Non-Cytoplasmic	408	418	0.81
Transmembrane Helix	419	439	0.93
Cytoplasmic	440	458	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEGLLRHEN DRDDRRITAC VILSTFVAVC SSFSYGCANG YTSGAETAIM KELDLSMAQF  60
   61 SAFGSFLNLG GAVGALFSGQ LAVILGRRRT LWACDLFCIF GWLSIAFAKN VLWLDLGRIS 120
  121 LGIGVGLTSY VVPVYIAEIT PKHVRGAFSA STLLLQNSGI SLIYFFGTVI NWRVLAVIGA 180
  181 LPCFIPVIGI YFIPESPRWL AKIGSVKEVE NSLHRLRGKD ADVSDEAAEI QVMTKMLEED 240
  241 SKSSFCDMFQ KKYRRTLVVG IGLMLIQQLS GASGITYYSN AIFRKAGFSE RLGSMIFGVF 300
  301 VIPKALVGLI LVDRWGRRPL LLASAVGMSI GSLLIGVSFT LQEMNLFPEF IPVFVFINIL 360
  361 VYFGFFAIGI GGLPWIIMSE IFPINIKVSA GSIVALTSWT TGWFVSYGFN FMFEWSAQGT 420
  421 FYIFAMVGGL SLLFIWMLVP ETKGQSLEEL QASLTGTT