YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15809974, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH  60
   61 FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN IVRLIIFWTL QAVWVWTVSL 120
  121 PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY 180
  181 SRHPNYFGEM LLWWGIFVAA SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG 240
  241 NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQELG

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	31	0.90
Cytoplasmic	32	38	0.68
Transmembrane Helix	39	57	0.82
Non-Cytoplasmic	58	63	0.68
Transmembrane Helix	64	86	0.89
Cytoplasmic	87	103	0.83
Transmembrane Helix	104	124	0.88
Non-Cytoplasmic	125	138	0.74
Transmembrane Helix	139	155	0.85
Cytoplasmic	156	185	0.85
Transmembrane Helix	186	204	0.86
Non-Cytoplasmic	205	210	0.69
Transmembrane Helix	211	231	0.91
Cytoplasmic	232	290	0.71