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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19527695
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEEHAVDA MENRRLPLFP IEPEPSVTAT QRLTLLATRL LRALQLNWRI IVSGITLTLL  60
   61 AVIWYYPTFF LFFAFVVYSL VLVFAAVAGT VYIHYIFTTN EPTPPSRVPS RLLYNATKSN 120
  121 IFDLPKPIKN PSNLPLIFGK TVDLQLQQII EYVMRDFMLP WLGYVVTKPK LINDVVREDL 180
  181 WNAIQKIHER ALRMDAAKII AVDMVNRVTV HLEKIRIAEA RAAETNTPPV FSTNSYLADE 240
  241 EKEMEFLRKL CEIMVILLLP RGYSLPPLKV LLSEILSYKI FFPMIKMLTA PDYINQKVVQ 300
  301 NIETRLAAAA MSKRSYEYAA SFEDFLKIIN NSGNLEELSL IRKSIVNDLM HATTMQNLQR 360
  361 AKGLDPDHED HSLSKSELTA AVRLKRYVRQ LTMAKGECEK NLAKFGWNGN YSSDIDLTLV 420
  421 EILNTAVGRR YFTLFLEPLK ASALIGFYLA VEEIKHAHKS ASHQLGTEIF YTYIRVPKSE 480
  481 IQIDKHERKL IETFLLGDAE PDIFYDIQRN VLRTLEEKYY PPFVLSDQYR QLKEALDSNE 540
  541 IADPTLLMCH TIGDVQEPLA DEQPVAADGL NGGAGGAIDV AAHTSYARRK LEQIQERIDK 600
  601 KNQALDALKY SVKPESKVLT ILEKEMEWLK SEKRQTEAHL RRTDAWTEHL GKWKATIQSV 660
  661 EVSDEKESLQ FMILVHVDED INAPVQPTSS KNGDSGHANL RKRPSGISSG WVVMRSLNQV 720
  721 HELQRKLRHV SSNLKAIDLP TNFKFFFLKT DRHGQEKAKS QIQKFLNFIL EDDHLNGSEA 780
  781 IYTFLSPSSD HLKQSLPSPK KSKFSLSTLF RSDAGKAHEA SKATDPFWGL QRDDEDISTY 840
  841 LDGESGGEAK MLAADLDSKD SIAEPMYALM GEIFDMGGVF KWLRKSLISF VQITYGRTIN 900
  901 RQIRESVAYL FEESMLHNYF SAILKSFWPG GVLASAYPTR SEDMREMTTT AAKALLTDHI 960
  961 PEVLCNLVGA QAAKRGVLKV FDALQNPAYN KQLFYELLEI LMIEFFPEIR QLRVSNSNGT1020
 1021 KLNTATAGAA AASAAAALVA ATASASLPSL NHSGGGHSAS TGGHQNHQGS SSASGSSAGA1080
 1081 SGATGGGAAS HHQSHYHHGS HHHQQQQHHH SQAGSSK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle