YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MYOM_DICDI
Protein type: Transmembrane
Type Confidence: 0.63
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHLEGDIVW VPHTVNGYCR GKIIGYNEKN QVTVRLLELN EEIKINEQLI QNYNQSDDKD  60
   61 FSDMVEIQDL SEAIILNNLG LRYKSDQIYT YIGNVLISIN PYKEIKDIYS LNILNKYKDI 120
  121 NTIKSNPPHI YAVALRAYQS MVSEKKNQSI IISGESGSGK TEASKTILQY LINTSNSNSN 180
  181 NNTNINNNNN SIEKDILNSN PILEAFGNSR TTKNHNSSRF GKFLKIEFRS SDMKIDGASI 240
  241 ETYLLEKSRI SHRPDVNNLS YHIFYYLVMG ASKEERERLG LDNDPSKYRY LDASTSVIES 300
  301 FKKQSNGGSG GGSGNNDLSE SLQLVKQSLE SMSIAKEQCD DIFLTLAAIL HLGNIEFEVD 360
  361 QTENEQTSGF SKISEQKASV KKSLSMVSKL LGYPEQVFKQ TLLNRNLKGG GRGSVYCRPM 420
  421 EVYQSEQTRD ALSKALYVRL FASIVEKINV KFIQNTGSKD LQGGYSSKRN NLFIGVLDIF 480
  481 GFENLSSNSL DQLLINFTNE KLQQQFNLNV FENEQKDYLQ EGIPWSTSNF IDNKECIELF 540
  541 EKKSYGLLSL LDDECMMPKG SEVTLLEKYN KQYHNTNQYY QRTLAKGTLG IKHFAGDVTY 600
  601 QTDGWLEKNR DSIPTEVEQL LSASSNNLIK SLFNLKELNK SNDNNSNNNN SNNNSSSSSS 660
  661 SQSTASITAK ASPPRERFNS GSGSGTTSPL NLSGSSSPLS GSGSYSIIGG NSNSNSNNNN 720
  721 SSNNKKSQSV SVAGQFIEQL NKLISTINST SVHYIRCIKP NVTMDCNNFN NSHVLSQLRN 780
  781 VGVLNTVKVR KMGYSYRRDF IQFYSRYNCI LNSLNIKINL TNINHSNLCK EILENVNSQY 840
  841 KNNNNNKNNN NQIVKITTNS KPTFQIGKTK IFISDELYIY LEKKRYDSLV DSVLKIQAFF 900
  901 KMIKIRNQYK RNKESSLFLQ TLIRAQRAKK DFEQLVILEN KRKEEERKKE LERQRKEEEE 960
  961 RQKELERQRR EEEKELERKR KEEERELERQ RKEEEKEQER KRKEEEKEQE RKKKEEKEIE1020
 1021 KKRKEEEKKK KKNEQNLSLP SLDITNSPSL INTTTTTTTT TTTTTNTSSP PLSPPISPRP1080
 1081 STPSSTSSSS STTSSPSTKK QLLFKFNSIS NLLSKSLHGS SHSDKNSKED NNSNNNNNGD1140
 1141 STIILSSDSS FGQPTPKATS TPTPPPPPPL KTQPVPISSG VENNSSPNLW SHRNSPNFNG1200
 1201 LVREKSRARI GRLTIRSASP LDLTYLPDPS KNEGSPQFTS QSLDFTPNIP PIITNSIVEQ1260
 1261 QSSLSGINKP IPQRTISSSE NSPLSRANSS ISSSLLILTP TLTSLSTSTT PSTPTTPKTP1320
 1321 TTLSSSSVST STSLSSVSSS VSSSSSSSIP TPIIESTPSN SNEDLITTLS SPISTGHTGE1380
 1381 SIEEKNKRFR IKIINELIET ERDYVRDLNI VVEVFLNPIR EKQLLSAKDI NSLFSNIEIL1440
 1441 FSINMNVLKA LEKDKDPLCE NISVGQTFLD MSHYLKMYTT YCSNQQNALK ILEEEKIKNQ1500
 1501 PFREYLEFCM NDSVCRGLPL NSFIIKPVQR ICKYPLLIKE TIKFTPNDHP DKPALEEVDK1560
 1561 KISDIVQSIN EAKRTLELFQ KIVDLQNSID GLEDTNLMEQ GRTLLMEGTV SAVKELNSED1620
 1621 SLSRTLFLFN NLILICSFGT NVLSTAINQF KTKKLKLKAK IPISDSRLIF VSDTDSVKYA1680
 1681 LEIVNIKEDS NYILCFNNDQ DRSKWFKQIK ALIQEQKLSN AKKAATIGNS RLIQTTS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle