YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19335712
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.99
Transmembrane Helix	32	54	0.94
Non-Cytoplasmic	55	78	0.87
Transmembrane Helix	79	97	0.91
Cytoplasmic	98	114	0.85
Transmembrane Helix	115	135	0.90
Non-Cytoplasmic	136	142	0.82
Transmembrane Helix	143	165	0.94
Cytoplasmic	166	172	0.91
Transmembrane Helix	173	193	0.89
Non-Cytoplasmic	194	203	0.72
Transmembrane Helix	204	222	0.62
Cytoplasmic	223	240	0.68
Transmembrane Helix	241	261	0.92
Non-Cytoplasmic	262	282	0.69
Transmembrane Helix	283	304	0.81
Cytoplasmic	305	311	0.60
Transmembrane Helix	312	333	0.66
Non-Cytoplasmic	334	358	0.81
Transmembrane Helix	359	379	0.88
Cytoplasmic	380	412	0.95
Transmembrane Helix	413	434	0.87
Non-Cytoplasmic	435	439	0.68
Transmembrane Helix	440	458	0.89
Cytoplasmic	459	476	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKFLEVIK PFCSILPEIA KPERKIQFRE KVLWTVITLF IFLVCCQIPL FGIMSSDSAD  60
   61 PFYWIRVILA SNRGTLMELG ISPIVTSGLI MQLLAGAKII DVGDTPKDRA LFNGAQKLFG 120
  121 MVITIGQAIV YVMTGMYGDP SEIGAGVCLL IIIQLFVAGL IVLLLDEPLQ KGYGLGSGIS 180
  181 LFIATNICET IVWKAFSPTT VNTGRGTEFE GAVIALFHLL ATRQDKVRGL REAFYRQNLP 240
  241 NLMNLLATVL VFAVVIYFQG FRFDLPIKSA RYRGQYSSYP IKLFYTSNIP IILQSALVSN 300
  301 LYVISQMLVV KFHGNFLINL LGVWADVGGG GPARSYPIGG LCYYLSPPES LGHIVADPIH 360
  361 AILYIVFMLG SCAFFSKTWI DVSGSSAKDV AKQLREQQMI MRGHRENSMI HELNRYIPTA 420
  421 AAFGGLCIGA LSVIADFMGA IGSGTGILLA VTIIYQYFEI FVKEQSEMGG MGTLLF