YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VPS15_PICPA
Protein type: Globular with Signal Peptide
Type Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAELSLLAP TAQPIALSVY VDFLSNIQYN KPLGTSRFLK TVKGLNDQGS IVVKVLVKPN  60
   61 SGLDLSEWVE KLEFLRLKLL DVPNVIPYNL VIDSVRAGYL IRPFQQRTLY ERVSIQPYLE 120
  121 PIEKKWIAFQ LIHAVMECHE RGQYHGDIKS ENVLLTSWDM VFLTDFAPFK PIYLPGNNPS 180
  181 QFSFYFDTSR RNVCYVAPER FLGEGTPTQY QEVDKLTSSM DIFSLGCTVA ELFLEGSVLF 240
  241 TLPQLFKYKK GEYTPSLSGI VDNDLRNMIQ EMIDLDPRKR ISAHDCLRKH RGKVFPEYFY 300
  301 SFLYDYMLEL STPSDHSVGN WRFDECDRRI ERIYNDMGMI CDKLDVNLDL NIVHSFTEEP 360
  361 SQNVIPMTLR LPGVEPHIPQ SSKTPYDSAL IILNILLHSM RNTTHSSYRI KSCDLILMIS 420
  421 EMLSDEQKLD RCLPYLVHLL NDPSIDVQAA ALKYMTQLLL LVDYLTPVNV LIFPEYILPK 480
  481 LASFLSTTKG SYMRMIFATI LPHLAKTALK FYEMAILLGS HVEKFELLKN FENLTIQLLI 540
  541 DPDSSAKISL LKNILPLASV FGKDKTNDII LSHMITYLND PDENLRVAFI ESILGLSIFV 600
  601 GITSLENYIL PLLVQTLTDN SEIVVVNVLR SFAELNNLGL IKKRYKFDLI KVSSKLLLHP 660
  661 NSWIRLGTLR LLISVVKDLS LTDFYCLLYP LVRPFFEYEV TNFDWATLYP CIIKPIPRSI 720
  721 YTLSITWALK AEKTLFWQQV KLAKPDPFGS RNSTFLLNRN SKIGESGVVS NNQIPTSPED 780
  781 IGWLGKLKAS GFDEKDLWKI ATLRDYIFRV ARSRSNIPTQ ENNEVTMQQM GIYPRIVFFE 840
  841 KGSMYETEGF VTGSSMMANY RILVNSEYSP ESLTKRKTVG GVNTNHTYSG ANPYILKFLE 900
  901 CIKFRHVLDD SEEFGPSIPS ATVEEGHWKF EGVLVSHLTE HTGSITSLAL SPDQQYFLTG 960
  961 DSKGIIRLWD VLQLERNGYA TSHVTVSMSS SVKDIKFIEN RNSFCAVTAD GEIKIFRVEI1020
 1021 NSTSSSVRSN GSPHRHESIS LLREHSLEGE HISDMKFIGP NLAVTTLSCK LILFDLRDMQ1080
 1081 IAEEIQNPVS HGFITSFDLD SSQSWLLIGT SKGILDFYDL RFELLVKSWK LKSTSYPIKH1140
 1141 ITVPPAGFTC NRKSERFALI NGGTNDSVTI VFDVSKGQCS ELYFTETVNL NTAIDNYEVL1200
 1201 EVDNGEERTR TSVLATEVED RSITSLTMLG SNQFLTATFD KRVILWDTGN KANSSALISK1260
 1261 LDDFTSSFSS VQVRPHLMAI NEKIVEKDPQ DIGGPKRNMA SANSSTFDLH SDIITGIAVI1320
 1321 QKPLKMLILV DRAGVINIYK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle