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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sbb-PH, sbb-PD
Protein type: Globular with Signal Peptide
Type Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKLAKVAL NSSNVATESN IKNNKLLANL SAAGAATATT ATTGTATTTT ATTANQALNF  60
   61 NNKTKATANA TAASANNRHN NNNNSSAIKK HTNTKQLAGK SPACNSSSSS LSSSSSSNSS 120
  121 ESKDTNFEYE DEWNIGGIPE LLDDLDADIE KSAHSSGGGN QATALNAKQA NSSSTSSSSS 180
  181 SKGGASSSSS SAAATGSSSS HKSHKTTLHS NLSATSPTTI KFTRQPVAIG GANSSSSSSA 240
  241 AAAPSGGSAN VVAKGSSSSS SSTSSSSSGK HHHHHHHHSN SSSSGSSSKG YKSALVAQLN 300
  301 SPSPLNSNSK SLSGSGSGSG NTNGAAGAGA GSTLSSSTFA GFSKGGSLVS SSAGAAAALA 360
  361 AGSGQQGSKF SAGGMSSQTG SGSGGNNTSN SNNSSSGSGG SGSGSSTGNT ASGSGNNNST 420
  421 SAGGPPSSQG GNNGNGSGSS SSSSSGKSSA KMSIDHQATL DKGLKMKIKR TKPGTKSSEA 480
  481 KHEIVKATDQ QQNGALGAGS NNSANEDGSS GSSSTNASSL GSTNSSSSAS SGSSSSSGSS 540
  541 SSSSKKHLNN ASSGSGSSSS GGGSQNNASG HASGGGSSGS SQSTPQGTKR GSSGHRREKT 600
  601 KDKNAHSNRM SVDKSAAAAS AAGEKDTPEK CSGTGAGGSP CSCNGDVGAP CSHHACIRRA 660
  661 AHMSNSAGNA NSSAGTGQSG GSSSMSAVPP GVFTPSAGSP STGSPSTVVP AAASLLAATG 720
  721 AASSSASQMA SSSAGGVGGS GGGANAPGPP GKESAGSIKI SSHIAAQLAA AAASNSYSGS 780
  781 GANTNQGQNS NAGGNGGSES KAAAAAQAKL MAPGMISATM HHTISVPAGT GTGDDDTKSP 840
  841 PAKRVKHEAG ASGAGGGKEM VDICIGTSVG TITEPDCLGP CEPGTSVTLE GIVWHETEGG 900
  901 VLVVNVTWRG KTYVGTLLDC TRHDWAPPRF CDSPTEELDS RTPKGRGKRG RSAGLTPDLS 960
  961 NFTETRSSIY FSHAQVHSKL RNGATKGRGA TRSASGNAAA NSNSSSSGNG GGATPSTSPT1020
 1021 AFLPPRPEKR KSKDEAPSPL NGDASDGASV GGIGGAGGVN MVNASGIPIS ASGGGLATQP1080
 1081 QSLLNPVTGL NVQISTKKCK TASPCAISPV LLECPEQDCS KKYKHANGLR YHQSHAHGAG1140
 1141 GGASSMDEDS MQAPEDPATP PSPGVASGTG SGASVASSAV PATAPSAGQG TVAVSPNTPL1200
 1201 ANSSNPVTNG NVAPSAPATG SVTIAAPNTT PSVVETQAPL TGPPPVTPPA PTPICAVATP1260
 1261 GAEQSVSSVL PLGNLPLTAG PNSATQQQQP PTQQQQPQLL VPGGSAASLQ QQQQQQQPVA1320
 1321 GGSITAGISG QALSQHQQQL MGGLPAMLSD QQQQALLQQG ALKAGVLRFG PPDGNPLQQQ1380
 1381 PGQASVNPQT QQSPPRPPSH VQDQQTPSAY AQQAGLKTSP GFGSVGVGAA SSKQKKNRKS1440
 1441 PGPSDFEGRV SREDVQSPAY SDISDDSTPV AEQEMLDKSV GQAVTAKHIE LMGKKPTEVG1500
 1501 VGVPPPPAPN MYVPGMYQFY PAQQQSAPPP QQQQQQPQYM VQTEPGKPPG LPPALTQAQQ1560
 1561 QQQLQPGAPP PTSQPPSHLL GPPGQQSVAA HLADYSGKNK DPPLDLMTKP QPQPGQPPSQ1620
 1621 QQQSGQLSGQ ENNGKDVGPP TSQPGSQPPP VNLSAVAGPP PGSLPPGLGG LSALGAAGLG1680
 1681 GPGPGKGMPH FYPFNFIPPA YPYNVDPNFG SVSIVASEEA AKLSGHPGLP PSSQAQQLSG1740
 1741 ISIKEERLKE SPSPHDQPKH MPSQQQMIAS KLIKQEPMTK QEIKQEPNSN PGQQHPPPQQ1800
 1801 QPAPQPQQQQ PPPPQPQQPH ALHPKDLQAL GAYPAIYQRH SINLAVQQAR EEELRRYYMF1860
 1861 TGRQNSAAAA AAAAAQNAAS GGLPPHPGMM HKDEPGMGSA AQQQQQQQQQ QMQIAQQQQQ1920
 1921 AIQQHHQHLQ QQHQAQQQQQ QQQHQQQQQQ QQQQQQQQQQ QQQQQKLKQS QAASAGANNK1980
 1981 ATNLTKDSPK QKGGDDDQPL KVKQEGQKPT METQGPPPPP TSQYFLHPSY ISPTPFGFDP2040
 2041 NHPMYRNVLM SAAGPYNTAP YHLPIPRPYH APEDLSRNTG TKALDALHHA ASQYYTTHKI2100
 2101 HELSERALKS PTSGSGPVKV SVSSPSIGPP QPGGPTSSGP GSGPVSGVLG PGSGSNQQPG2160
 2161 SAPGSAGGVP LNLQPPPGGM GPSPGSKPDL SGPKGHGGVT PGSSLDGHKQ SMPGGPPPNG2220
 2221 PSGNGAVGGV GGAAGNGAAG GGGAGAADSR SPPPQRHVHT HHHTHVGLGY PMYPAPYGAA2280
 2281 VLASQQAAAV AVINPFPPGP SK

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