YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S4A7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	611	0.98
Transmembrane Helix	612	634	0.88
Cytoplasmic	635	646	0.73
Transmembrane Helix	647	668	0.83
Non-Cytoplasmic	669	699	0.88
Transmembrane Helix	700	723	0.88
Cytoplasmic	724	729	0.80
Transmembrane Helix	730	750	0.82
Non-Cytoplasmic	751	826	0.90
Transmembrane Helix	827	846	0.92
Cytoplasmic	847	861	0.91
Transmembrane Helix	862	883	0.89
Non-Cytoplasmic	884	913	0.96
Transmembrane Helix	914	933	0.96
Cytoplasmic	934	953	0.89
Transmembrane Helix	954	978	0.89
Non-Cytoplasmic	979	1013	0.90
Transmembrane Helix	1014	1033	0.84
Cytoplasmic	1034	1039	0.56
Transmembrane Helix	1040	1058	0.72
Non-Cytoplasmic	1059	1088	0.59
Transmembrane Helix	1089	1122	0.74
Cytoplasmic	1123	1218	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADGAGEQM RPLLTRGPDE EAVVDLGKTS STVNTKFEKE ELESHRAVYV GVHVPFSKES  60
   61 RRRHRHRGHK HHHRRRKDKD SDKEDGRESP SYDTPSQRVQ FILGTEDDDE EHIPHDLFTE 120
  121 MDELCYRDGE EYEWKETARW LKFEEDVEDG GDRWSKPYVA TLSLHSLFEL RSCILNGTVM 180
  181 LDMRASTLDE IADMVLDNMI ASGQLDDSIR ENVREALLKR HHHQNEKRFT SRIPLVRSFA 240
  241 DIGKKHSDPH LLERNGEGLS ASRHSLRTGL SASNLSLRGE SPLSLLLSHL LPSSRAGTPA 300
  301 GSRCTTPVPT PQNSPPSSPS LSRLTSRSSQ QTQPQAPEVL VSPDRDDIPR VVIHPPEEDI 360
  361 EALKGQEQKN EENTDFTPGI LASPQSAPGN LDSSKSGEVK GNGSGGSREN STVDFSKVDM 420
  421 NFMRKIPTGA EASNVLVGEV DFLERPIIAF VRLAPAVLLS GLTEVPVPTR FLFLLLGPAG 480
  481 KAPQYHEIGR SIATLMTDEI FHDVAYKAKD RNDLLSGIDE FLDQVTVLPP GEWDPSIRIE 540
  541 PPKSVPSQEK RKIPAFPNGS APVSADPPKE ADHHAGPELQ RTGRLFGGLI LDIKRKAPFF 600
  601 LSDFKDALSL QCLASILFLY CACMSPVITF GGLLGEATEG RISAIESLFG ASLTGIAYSL 660
  661 FAGQPLTILG STGPVLVFEK ILFKFCRDYH LSYLSLRTSI GLWTSFLCIV LVATDASSLV 720
  721 CYITRFTEEA FAALICIIFI YEALEKLFHL GEIYAFNMHN NLDALTSYTC VCAEPSNPSN 780
  781 ETVELWERKN VTAASISWAN LTVSECKTFH GMFVGSACGP HGPYVPDVLF WCVVLFFTTF 840
  841 FLSSFLKQFK TKRYFPTKVR STISDFAVFL TIVIMVAIDY LVGIPSPKLH VPEKFEPTDP 900
  901 SRGWIISPLG DNPWWTLLIA AVPALLCTIL IFMDQQITAV IINRKEHKLK KGAGYHLDLL 960
  961 MVAVMLGVCS IMGLPWFVAA TVLSISHVNS LKVESECSAP GEQPKFLGIR EQRVTGLMIF1020
 1021 ILMGLSVFMT SVLKFIPMPV LYGVFLYMGV SSLKGIQFFD RIKLFGMPAK HQPDLIYLRY1080
 1081 VPLWKVHVFT VVQLTCLVLL WVIKASAAAV VFPMMVLALV FVRKLMDLCF TKRELSWLDD1140
 1141 LMPESKKKKE DDKKKKEKEE AERMLQGDGD TVHLPFERGS LLQIPVKTLK YSPEKPVSVT1200
 1201 INFEDEPSKK YMDAETSL