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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RPN2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL  60
   61 EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN GILKCKIGEA GPKDIVSQLQ 120
  121 AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP 180
  181 ESSTFAAGLA YETLAGVISL APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD 240
  241 ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL 300
  301 ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS 360
  361 VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE SAHEKVYITE AQTKVPIAAT 420
  421 GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP 480
  481 HQAFFKLKHE SQVEHIFLVK TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS 540
  541 LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG 600
  601 VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL 660
  661 KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle