YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18913080
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.95
Transmembrane Helix	97	116	0.86
Non-Cytoplasmic	117	122	0.70
Transmembrane Helix	123	142	0.94
Cytoplasmic	143	172	0.93
Transmembrane Helix	173	196	0.88
Non-Cytoplasmic	197	214	0.91
Transmembrane Helix	215	234	0.93
Cytoplasmic	235	244	0.79
Transmembrane Helix	245	264	0.94
Non-Cytoplasmic	265	283	0.79
Transmembrane Helix	284	302	0.94
Cytoplasmic	303	319	0.87
Transmembrane Helix	320	341	0.93
Non-Cytoplasmic	342	358	0.91
Transmembrane Helix	359	382	0.86
Cytoplasmic	383	462	0.98
Transmembrane Helix	463	480	0.89
Non-Cytoplasmic	481	486	0.63
Transmembrane Helix	487	507	0.92
Cytoplasmic	508	515	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNKKQQKR QQERHDDPDL EPLNKKNDEQ VIETDEGVIK NRSSQKEEKK SYQSNQSDGS  60
   61 RIQKRQSQDQ ENWSDDSAEE ANQIDDLKHE EKADVWNATI NMVKGFVGIG ILALPSGFAK 120
  121 SGWLGGLIIF LLCAGMVLYL SLQMMDAANK RKSQARGVTQ FSVEVLGQEK ELLVNIFLFG 180
  181 IQIGICVAYV IFFTTYFQES LCFFVDYDRT TNVCGSRVPS LLISLIIVTP TIFIRHMSKL 240
  241 KTWSMFSNSL ILISMLVVFI SCFFKMDTSY ITSDKISAIR WGEMGSAIGL FVFAFEGTTL 300
  301 YFEIRSSMQE PTEFKKVLNY SLYIGIALYG CIGLSGYLAF GSGVRDIIPF NFPMTNPLYV 360
  361 FIQIFYCIAI LISYPLQMFP LVNILEQKLL ERIVNEKNKQ KTNSQPQKKS QQGVDQSQHH 420
  421 NQGNQQADDR QDNQESDASE GNALNLLTQY DDEIKNSFYQ QSMILRVASL LFIFFFAIVF 480
  481 KRLTVFLNLI GSIGGCFFAF IIPVIVYEYS MPEAS