YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54643959, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQCRSVKD MRVLMDADAR SMDIDRHFWR PFSRLRCRRT TNNRSKQKRK QREAAAVKRK  60
   61 RANEQISVYS IDKPQDIAKE AKGFKNRGHQ MQDGSGPTSK NAVWAAVTFA KKYYSRTDCG 120
  121 QFCNCSVHAL VRRHPDFVRH QLRFYWNLAR VGQYTDRHER DAAIASAYNE SFDHNLQNDP 180
  181 LAADAVVGRH RASAAASIQA QAQAQAQAQA QAQQQQQQRH RRRHGWCGCF GSGGRNTRPV 240
  241 EKTTPPPPGY TTKSKKRKPK SQTVWSALLT NLGICMLLLA YTLLGSFIFL TIENEDSALL 300
  301 HQQHTLASTK RQHTVDNDTV AAAVAAAQGL LPGHGGGTSS YGMAPQGASS NDFVYGVDVA 360
  361 DEAEMQENAG GMPQFGLGLG LGISPDTYDV RQRTIENIWD ITVSLNILYK ENWTKLAALE 420
  421 IAKFQDQLIK RLNEDVMLQL SHEDMANAGV GAGGASGSGN NPATEAVLLH THFYHHRAAG 480
  481 GGVVPGGTGG PPHEWNFAKA FLYSLTVLTT IGVETILHRD ELVSMELEKL RVINYGLSIP 540
  541 LQGHLVPFCG LAPLLQSSSS YLQTPVLEQE LWNLLVGHFA GQIDVHDLYS QIEGLVVKRD 600
  601 DVQSLCFVVN FSPTAGYGNI APRTTLGRIV TLVYALFGIP LTLVYLSSTG SILAKIAREV 660
  661 FSKALCCCLC SNCGYCCYDE KRMAEKERRM RRKRQQEELR KQQAAMQEPY YVRDVYHTTP 720
  721 EKQAEAEAAG GGAPPATVAS VSNSSGGLSG ISVGGVGGGV AGGPPTSLPN DIDSLSASES 780
  781 RGSMHGLSIM APILLCFSMM IIYIVFGAAV LYRLENWPIV DGIYFCFMSL STIGFGDMLP 840
  841 GLRRESNTTT WFCSVYIMSG MTLTAMCFNV IHEEIVHRIR IVVDFKKTDL ANSSTGLPPG 900
  901 GPVIVAGAGS DTPTSLVLKD YVNHELVPIL TMDPNGAPRL APAPAYTPTV TSCEVTTPSN 960
  961 SCIAHGSDSA LGYSSLNSPL LDVLNTPTTS QAAASGVYTL TEETEIELQE TQVDRI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle