YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125807904, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	393	0.94
Transmembrane Helix	394	417	0.86
Non-Cytoplasmic	418	438	0.89
Transmembrane Helix	439	462	0.89
Cytoplasmic	463	469	0.86
Transmembrane Helix	470	492	0.89
Non-Cytoplasmic	493	498	0.63
Transmembrane Helix	499	517	0.95
Cytoplasmic	518	526	0.86
Transmembrane Helix	527	548	0.93
Non-Cytoplasmic	549	554	0.76
Transmembrane Helix	555	574	0.92
Cytoplasmic	575	637	0.95
Transmembrane Helix	638	661	0.85
Non-Cytoplasmic	662	674	0.76
Transmembrane Helix	675	695	0.93
Cytoplasmic	696	701	0.95
Transmembrane Helix	702	724	0.92
Non-Cytoplasmic	725	735	0.87
Transmembrane Helix	736	759	0.86
Cytoplasmic	760	770	0.81
Transmembrane Helix	771	792	0.84
Non-Cytoplasmic	793	801	0.79
Transmembrane Helix	802	823	0.92
Cytoplasmic	824	858	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRDNRGAG GGGGGHQPLS SAMGKLKEKL TRAGDDQGYH RVESNLSTSN TATSLDTILP  60
   61 EDPFLFPQAA PQRHPLPRPL RLLEDEPPLS FRPLLEDDDI NEPPTQPFQQ QQQRTPLRAS 120
  121 GSLELTPLPP PPTSQEIREH RDRQQRSVPV PVEDLQRSKQ SLKGSRVSFE KNNASSKPPA 180
  181 QAESSDEDSF EDKRIGFQQQ KATSVDHKGI LKDLKHILAN DNRRQFQAKK HVSLDVKGTR 240
  241 FLQDLLKESS SEEEFHKTRR EFQGRKHQSL DPRVTFKLDK VLQGSSTDSD EEGDDPEHKR 300
  301 LIHRPKDITK PLIIDLKDLE SESDEDFHTS RQHFQQQRSI STDSRKSRRP YEMDEMGNKR 360
  361 GENIRHAVPF VRQITEDGKP KLEVYRPTTN PIYIWTQVLA ALSVSLGSLV VGFVSAYTSP 420
  421 ALVSMTNRNM TSFEVTPQAA SWVGGIMPLA GLAGGIAGGP FIEYLGRRNT ILATAIPFIV 480
  481 SSLLIACAVN VAMVLAGRFL AGFCVGIASL SLPVYLGETV QPEVRGTLGL LPTAFGNIGI 540
  541 LLCFVAGTYM DWSMLAFLGA ALPVPFLILM FLIPETPRWF VSRGREEKAR KALSWLRGKE 600
  601 ADVEPELKGL MRSQADADRQ ATQNKMMELL KRNNLKPLSI SLGLMFFQQL SGINAVIFYT 660
  661 VSIFKDAGST IDGNLCTIIV GIVNFMATFI ATLLIDRAGR KILLYVSNIA MIITLFVLGG 720
  721 FFYCKSHGQD VSQLGWLPLS CFVIYILGFS LGFGPIPWLM MGEILPSKIR GSAASVATAF 780
  781 NWSCTFVVTK TFQDMIDFMG AHGAFWLFGS ICFIGLFFVI LYVPETQGKT LEDIERKMMG 840
  841 RVRRMSSVAN MKPLAFNM