YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23304858, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.13
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	584	0.93
Transmembrane Helix	585	606	0.93
Cytoplasmic	607	614	0.79
Transmembrane Helix	615	635	0.89
Non-Cytoplasmic	636	664	0.81
Transmembrane Helix	665	688	0.81
Cytoplasmic	689	695	0.65
Transmembrane Helix	696	718	0.87
Non-Cytoplasmic	719	726	0.81
Transmembrane Helix	727	747	0.93
Cytoplasmic	748	839	0.59
Transmembrane Helix	840	863	0.86
Non-Cytoplasmic	864	946	0.57
Transmembrane Helix	947	961	0.13
Cytoplasmic	962	1253	0.55
Transmembrane Helix	1254	1274	0.81
Non-Cytoplasmic	1275	1282	0.53
Transmembrane Helix	1283	1302	0.92
Cytoplasmic	1303	1327	0.55
Transmembrane Helix	1328	1355	0.73
Non-Cytoplasmic	1356	1362	0.51
Transmembrane Helix	1363	1386	0.84
Cytoplasmic	1387	1393	0.44
Transmembrane Helix	1394	1418	0.83
Non-Cytoplasmic	1419	1516	0.64
Transmembrane Helix	1517	1538	0.92
Cytoplasmic	1539	1543	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATGVPAEL NNLGAPITAT TQNPSGLANS QVTSGPASSA TQHDEHRSSA GNTLADEEND  60
   61 KAVESEKAEV IDAAADGKQK RLAADSSENI VTELEPHHVS IHRGKEEFAA LERRYSTLSQ 120
  121 QSQHELHRPT TRHSVRSSFS RKDRVVSRLT QDDAEKAKEG EGEFNLVDVL RSGRENQDEA 180
  181 GIKRKAVGVI WEDLEVIGAG GMRINIRNFS SAIIEQFMMP AFKILSIFGV NPFAPKPKAI 240
  241 LHPSSGLLKP GEMCLVLGRP GAGCTTFLKT ITNQRAGFME IKGNVEYAGV GWKEMRKRYG 300
  301 GEVVYNQEDD DHLPTLTVAQ TIRFAPATKT PKKKIPGVSA KQFQDDMLDL LLSMLNIKHT 360
  361 ANTIVGNAYV RGVSGGERKR VSIAEMFCSG ATVCSWDNST RGLDASTALD YAKSLRLLTD 420
  421 IMGQTTFVSL YQAGEGIYDQ FDKVLVLNEG HVAYFGPAKE ARQYMIGLGY RDLPRQTTAD 480
  481 YLSGCTDVNE RRFADGRDET NVPATPEEMD KAYKESEVCA RMTREREEYK QLMAEDATAR 540
  541 EDFRQAVLEQ KHKGVSKKSP YTVSFLQQVF IIFKRQLRLK FQDHFGISTG YATAIISALI 600
  601 VGSVYFRLPE TASGAFTRGG LLFLGLLFNA LTSFSELPSQ MLGRSVLYRQ NEYRFYRPAA 660
  661 FALAAVLADV PYNASVIFLF SIVLYFMGGL YSSGGAFFMF FLFVFLTFMV MSAFFRTLGV 720
  721 ATSDYNVAAR LASVLISFMV TYTGYMIPVQ RMKRWLFWIF YLNPLSYGYE AIFANEFSRI 780
  781 NLTCDSSYTI PRNIPEAGIT GYPDTLGPNQ MCSIFGSTPG DPNVSGSDYM ATGYSYYKAH 840
  841 IWRNFGILLG FFAFFMFLQM LFIEVLEQGA KHFSINVYKK EDKDLKAKNE RLAERLEAFR 900
  901 AGELEQDLSE LKMRPEPFTW EVLNYTVPVP GGHRQLLNDI YGYVKPGSLT ALMGASGAGK 960
  961 TTVLDVRASR KNIGVIEGDV LMNGRPIGTG FQRGCGYAEQ QDTHEWTTTV REALRYSAYL1020
 1021 RQPQHVPKQE KDDYVEDIIE LLELQELADA MIGFPGYGLS VEARKRVTIG VELAAKPELL1080
 1081 LFLDEPTSGL DGQSAYNIVR FLKKLCAAGQ KILCTIHQPN ALLFQSFDRL LLLQRGGECV1140
 1141 YFGDIGPDSK VLIDYLERNG AKVPHDANPA EFMLEAIGAG SRKRIGSDWG EKWRNSPEFA1200
 1201 EVKREIQELK AEALAKPVEE KSNRTEYATS FFFQLKTVLR RTNVALWRNA DYQWTRLFAH1260
 1261 LAIGLIVTLT FLQLDNSVQS LQYRVFAIFF ATVLPALILA QIEPQYIMSR MTFNREASSK1320
 1321 MYSSTVFALT QLLSEMPYSL GCAVSFFLLL YYGVGFPYAS SRAGYFFLMI LVTEVYAVTL1380
 1381 GQAVAALSPT ILIAALFNPF LLVLFSIFCG VTAPPPTLPY FWRKWMWPLD PFTRLISGLV1440
 1441 STVLQDQEVV CKDGEYQVFP APSGQTCQQW AGAFAEAIGG YINNPDSTGD CQFCQYRTGQ1500
 1501 AFFTPLEISF STRWRDFGIF ICYVVFNILV LLIAARFLKW QRR