YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PALI_EMENI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKPATPLT ILLLIAFVLL LLSVISTPIV KSIPLATFDN VEYGVFGYCK AGTCTAIHIG  60
   61 YTTEEIENTG STDSDFNLPS DARRSLSSIL IVHPIAAFLT LICLCLAAAA HLHAPSHSPR 120
  121 YLLALLILLL PTLLVSLLAF LVDILLFVPH LSWGGWIVLA ATIILVTCGV VTCAMRRTLV 180
  181 SRKARKRRIA ENAEMSGQNY YNRQNAAAAA LNESKPIAPE AKETFVAATQ SSESGPTFAT 240
  241 FRTNTRSSDD DRTPLNNHSD PSAQDAGYQS RIPGDPVPYN APRDDFGNPL PPGAYNSAPR 300
  301 MRTPGPPGPP PPDSRVRDQY SDPRRGPPTG FAPRGRGGYP PRGGYGRGGP YGGPYGPNSR 360
  361 APLTGRGGYM GPMRGGPAGP MARGGYRPQP AAGGYGNARA MGEDEYGYRG PSSRQRTPGP 420
  421 MAAPAAPGPA GQAIEMMPQP RHEPDAQDEV PEQQQLHAIS IDNQHEPVSP TSLYSRTQSY 480
  481 VPPRRNWGPQ AYQSSEPNLP YQPNQPRHAR SQSGSMYYED EDPVYTSRNE SAVGNSGVPS 540
  541 VLTPGNSAK

Type	Start	End	Confidence
Signal Peptide	1	26	0.85
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	89	0.94
Transmembrane Helix	90	112	0.91
Cytoplasmic	113	121	0.84
Transmembrane Helix	122	145	0.90
Non-Cytoplasmic	146	155	0.76
Transmembrane Helix	156	179	0.90
Cytoplasmic	180	549	0.99