YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5420310
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.99
Transmembrane Helix	87	108	0.93
Non-Cytoplasmic	109	123	0.90
Transmembrane Helix	124	144	0.94
Cytoplasmic	145	153	0.78
Transmembrane Helix	154	173	0.95
Non-Cytoplasmic	174	179	0.76
Transmembrane Helix	180	202	0.88
Cytoplasmic	203	212	0.74
Transmembrane Helix	213	235	0.88
Non-Cytoplasmic	236	248	0.83
Transmembrane Helix	249	269	0.87
Cytoplasmic	270	319	0.92
Transmembrane Helix	320	342	0.84
Non-Cytoplasmic	343	361	0.85
Transmembrane Helix	362	383	0.93
Cytoplasmic	384	404	0.92
Transmembrane Helix	405	424	0.95
Non-Cytoplasmic	425	431	0.81
Transmembrane Helix	432	454	0.90
Cytoplasmic	455	462	0.73
Transmembrane Helix	463	486	0.83
Non-Cytoplasmic	487	495	0.82
Transmembrane Helix	496	518	0.93
Cytoplasmic	519	652	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRELDYITPA LGKSASTTRL STMTGPIEAP RPRRIPYWRI LTDQGVVTPD IIDHAYVGSG  60
   61 TEEDPFVVEW IPDDPRNPMG FDTSLKWTYT VIVAFATFAV SLASSAYAGS ISEVIKDFDV 120
  121 SEEVATLGVS LFVLGFAVGP LLWAPLCELM GRQLVFLGTF FCLSAFCAGA VGSQNVWTLI 180
  181 ILRFFAGSFG SSPLTNAGGV IADIFTADQR GLATSLFAGA PFLGPTLGPV VGGFLGEYAT 240
  241 ADHFLGWRWV QVFLAVFTGL IWIVQGLVIP ETYAPLLLSK RADRLSSLTG RVYRSKVEID 300
  301 RGRVSARDAF TTALSRPWIL LFSEPIVLLL SLYMAIVYGT LYMLFDAFPI IFQNIRGWGE 360
  361 GVGSLPFLAV MIGMMLAVGL NMYDNKRYVR IHKAHDGFAP PEARLPPTMW GGLAIPVGLF 420
  421 WFAWTNSGSL PWIVSVLATA PFGFGMVFVF LGIMNYLIDS YTIYAASVLA ANSIIRSGFG 480
  481 AGFPLFTTYM YQNLGIHWAS CVPAFLSLAC APFPFIFYHY GPMIRRRCKY AAEADSFIRS 540
  541 LAQKAKAPDC VDEKQNEAKP VPTTTDHGAL AEINPDGDAS SVSSRSSLER IETAYDANPY 600
  601 DIDRVNTQNS AITRRSHSTK GRRSWLSSFG RSQVSRTACA ASKDTRLDSL NT