YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21748416
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	487	0.65
Transmembrane Helix	488	502	0.22
Cytoplasmic	503	512	0.52
Transmembrane Helix	513	536	0.87
Non-Cytoplasmic	537	542	0.55
Transmembrane Helix	543	569	0.77
Cytoplasmic	570	589	0.50
Transmembrane Helix	590	616	0.61
Non-Cytoplasmic	617	624	0.42
Transmembrane Helix	625	645	0.93
Cytoplasmic	646	652	0.39
Transmembrane Helix	653	677	0.83
Non-Cytoplasmic	678	761	0.51
Transmembrane Helix	762	783	0.87
Cytoplasmic	784	1195	0.61
Transmembrane Helix	1196	1216	0.86
Non-Cytoplasmic	1217	1228	0.56
Transmembrane Helix	1229	1251	0.75
Cytoplasmic	1252	1268	0.69
Transmembrane Helix	1269	1299	0.70
Non-Cytoplasmic	1300	1314	0.69
Transmembrane Helix	1315	1337	0.84
Cytoplasmic	1338	1348	0.61
Transmembrane Helix	1349	1375	0.81
Non-Cytoplasmic	1376	1466	0.79
Transmembrane Helix	1467	1488	0.94
Cytoplasmic	1489	1501	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKMSSQD ESKLERATSQ DSSSENHSIN EYHGFDAHTS ENIQNLARTF THDSFKDDSS  60
   61 AGLLKYLTHM SEVPGVNPYE QEEINNEQLD PDSENFNAKF WVKNLRKLFE SDPEYYKPSK 120
  121 LGIGYKNLRA YGVANDSDYQ PTVTNALWKL ATEGLRHFQK DDESRYFDIL KSVDAIMRPG 180
  181 ELTVVLGRPG AGCSTLLKTI AVNTYGFHIG KESQITYDGL SPKDIEHHYR GDVIYSAETD 240
  241 VHFPHLSVGD TLEFAARLRT PQNRGEGIDR ETYAKHMASV YMATYGLSHT RNTNVGNDFV 300
  301 RGVSGGERKR VSIAEASLSG ANIQCWDNAT RGLDSATALE FIRALKTSAV ILDTTPLIAI 360
  361 YQCSQDAYDL FDKVVVLYEG YQIFFGKATK AKEYFEKMGW KCPQRQTTAD FLTSLTNPAE 420
  421 REPLPGYEDK VPRTPQEFEA YWKNSPEYAE LIQEIDEYFV ECEKSNTRET YRESHVAKQS 480
  481 NNTRPASPYT VSFFMQVRYG VARNFLRMKG DPSIPIFSVF GQLVMGLILS SVFYNLNQTT 540
  541 GSFYYRGASM FFAVLFNAFS SLLEIMSLFE ARPIVEKHKK YALYRPSADA LASIISELPV 600
  601 KLAMSMSFNF VFYFMVNFRR NPGRFFFYWL MCVWCTFVMS HLFRSIGAVS TSIAGAMTPA 660
  661 TVLLLAMVIY TGFVIPTPSM LGWSRWINYI NPVGYVFEAL MVNEFHGREF QCAQYVPSGP 720
  721 GFENVSRSNQ VCTAVGSIPG NEMVSGTNYL AGAYQYYNSH KWRNLGITIG FAVFFLAIYI 780
  781 ALTEFNKGAM QKGEIVLFLK GSLKKHKRKT AAAKKGDIEA GPVSGKLDYQ DEAEAVSNEK 840
  841 FTEKGSTGSV DFPENREIFF WKDLTYQVKI KKEDRVILDH VDGWVKPGQI TALMGASGAG 900
  901 KTTLLNCLSE RVTTGVITDG ERLVNGHALD SSFQRSIGYV QQQDVHLPTS TVREALQFSA 960
  961 YLRQSNKIPK KEKDDYVDYV IDLLEMTDYA DALVGVAGEG LNVEQRKRLT IGVELVAKPK1020
 1021 LLLFLDEPTS GLDSQTAWSI CKLMRKLADH GQAILCTIHQ PSALIMAEFD RLLFLQKGGR1080
 1081 TAYFGELGEN CQTMINYFEK YGADPCPKEA NPAEWMLQVV GAAPGSHAKQ DYFEVWRNSS1140
 1141 EYQAVRDEIS RMEVELSKLP RDNDPEALLK YAAPLWKQYL LVSWRTIVQD WRSPGYIYSK1200
 1201 IFLVVSAALF NGFSFFKAKN NMQGLQNQMF SVFMFFIPFN TLVQQMLPYF VKQRDVYEVR1260
 1261 EAPSRTFSWF AFIAGQITSE IPYQVVVGTI AFFCWYYPLG LYSNATPTDS VNPRGVLMWM1320
 1321 LVTSFYVYTS TMGQLCMSFS ELADNAANLA TLLFTMCLNF CGVLAGPSVL PGFWIFMYRC1380
 1381 NPFTYLIQAM LSTGLANTFV RCADREYVSV QPPNGQTCSS YLDPYIKMAG GYFETNNDGS1440
 1441 CSFCQMSSTN TFLKSINSLY SERWRNFGIF IAFIAINIIL TVLFYWLARV PKGNREKKNK1500
 1501 K