YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16416109
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.65
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSTVAAAL GKLLFVAVVT LVISVANALS SVPELSDWEQ DQYLTLQLTV PLGSGDAKPI  60
   61 RHRVVPLTEA VGMNQSVIAR ESITIKGTMV PTEESGWLEF IDSNSIAYLN CDNSNSTSFF 120
  121 DQLMSKAPKA ILLFSLAGAG CRRDSTDDWN YTTLFTMTDQ IDARDTLNLT MSGSLATITG 180
  181 DYEEPDDDDD EDRTGHGSPI AMNILYSITG VITLLFLAII ATGAIRAHRY PERYGPRPGY 240
  241 GGRPSQSRAK GLARAVLETL PIVKFGEKSP AKPDPDFQLE QQPSRSSQDP TPRAKLSAIQ 300
  301 EAVPSIAKSQ GPMTVASVEA SEQASSATVY GAQTGMTNTA GDIENTTPDD INLGCPICTE 360
  361 DFTIGEDVRV LPCNHRYHPA CVDPWLVNIS GTCPLCRLDL RPHSSTESTT GPGDNHSVSL 420
  421 PTAAGDNAQQ PGTSGSPMPS TTPRERRRSL RILDLHRLRA ASIEERMEIL RRHRSQQQQR 480
  481 RHVTGSSLTG DPDTGESADP THRARLAERF RGRFRASRPP GRRSHNQQR

Type	Start	End	Confidence
Signal Peptide	1	28	0.96
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	203	0.98
Transmembrane Helix	204	225	0.62
Cytoplasmic	226	529	0.65