YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15528453
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.99
Transmembrane Helix	101	124	0.84
Non-Cytoplasmic	125	134	0.81
Transmembrane Helix	135	156	0.90
Cytoplasmic	157	165	0.84
Transmembrane Helix	166	185	0.95
Non-Cytoplasmic	186	191	0.82
Transmembrane Helix	192	214	0.88
Cytoplasmic	215	226	0.83
Transmembrane Helix	227	248	0.93
Non-Cytoplasmic	249	255	0.84
Transmembrane Helix	256	276	0.94
Cytoplasmic	277	292	0.83
Transmembrane Helix	293	312	0.92
Non-Cytoplasmic	313	323	0.68
Transmembrane Helix	324	343	0.93
Cytoplasmic	344	358	0.83
Transmembrane Helix	359	379	0.91
Non-Cytoplasmic	380	393	0.86
Transmembrane Helix	394	415	0.91
Cytoplasmic	416	426	0.80
Transmembrane Helix	427	447	0.92
Non-Cytoplasmic	448	454	0.76
Transmembrane Helix	455	476	0.92
Cytoplasmic	477	495	0.89
Transmembrane Helix	496	517	0.91
Non-Cytoplasmic	518	572	0.95
Transmembrane Helix	573	591	0.60
Cytoplasmic	592	619	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNKNQVQK NKKDDWHTSD RSVHSLSSDN GNYSPTSDEP RPLEPVKSIL SARNDVDEPN  60
   61 NHDYQEKEFN EQLKPMATQQ SLSKKLGDSH DKLLSPKELK IILLAMSLSL MVSFIDQNGI 120
  121 AIVLPYIADE LNAQLTISWA GTSQLIANCC FQLLYGRLAD IFGRKYVLLT CILLLGFFDL 180
  181 ACGLAKTDAQ FFVFRALTGV ANGGVTSLAM VIMSDHVTLK ERGKYQGYLT SFIGIGNAVG 240
  241 PFLASAFTTY SNWRNYYYTL FAIVTASSGI IWWFLPYSHS PISIKEKLLN IDYFGFLFSS 300
  301 VGLILVLIPI NGGGLTFAWG SPKVIVMFAV GGLSLVAFLF IEWKVAKLPM VPFRLFKSMS 360
  361 LVIVFTQCFF FGMCYYPLFY YYTYYFEVVK DLKPIITACF FLCVVIPHAV MSAVSGKIVS 420
  421 KTGHYNPVIW AGYTFWVLGF SLLAGVVKVS TPYYGIALIM VLNGLGQGMT FQNTLIAALA 480
  481 HSKQQDRAVV ISTRNVLRSF GGSFGMAFSS MIFATSFTKD LKTNSFINQS SNGYLKKYLQ 540
  541 EHVYSKVDFT QISVDAQQHL YVQELYMKCT KNVFTFWAPL IGACYVGSWF IRDRGVASKS 600
  601 DQDRLAKAEK EAQSPEQKV