YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|164426110, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQSTFKQL PRSFGSAAKA ATRTPASRRT FLSPPRSQPN EHLNRLDVNK LSEQQLKYAR  60
   61 NRRAFLWTGL FCSVSSMIYV GYLIKLELKK PVHADSSLPS TDPLAGTNAV ERKVVLRDEK 120
  121 GHELVPTGNS TVPTFPRTLE LGSFEGAIAP APGPSASGLA PTITGPDQTE YTLVGFGLRT 180
  181 VTFIGIQVYV VGYYVATADV APLQSALTKK VNPIATTLVA GERDQLRTDL LDPAKGEEIW 240
  241 DGLLANGIPA RSVFRVVPVR DTDFHHLRDG FVRAIQARAG KVGDEQFGEA MKDFRQIFNR 300
  301 GKVPAKQELL LIRDGEGKLS VVYDDGGNKK EGRPAGRQLV GTVDDERVSR ALWLNYLAGK 360
  361 KVASEPARKS IVEGIMEFVE RPVGTIAAQV V

Type	Start	End	Confidence
Cytoplasmic	1	63	0.88
Transmembrane Helix	64	83	0.86
Non-Cytoplasmic	84	391	0.95