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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27524883
Protein type: Transmembrane
Type Confidence: 0.61
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSQSQTIG LDTLAEGSQY VLEQLQLSRE GGNSENNSTF KPSSVRDSLA EARSMIRKNS  60
   61 SSAPVRRRIS RACDQCNQLR TKCDGQNPCA HCIEFGLTCE YARERKKRGK ASKKDIAAAA 120
  121 AAAGHQGGMG NRSPTDRRLS QEPGGRYDSV LEASRVQSHL PANGLSSIHN TQAAHSQPPL 180
  181 GSALDALHLN HFTQLNESGR SQMPVSDLRS LQILHNNPRS PSALPHGLNA YNDNTFSLLN 240
  241 SQEPNTTSLN HFRLGNSTDN PSAQFLGLSP PAQSPGWLPL PSPSPANFPS FPMAPFSGTS 300
  301 LRYPVLQPVL PHIASIIPQS LACDLLDLYF TSSSSSHLSP QSPYVVGYIF RKQSFLHPTK 360
  361 PRVCSPGLLA SMLWVGAQTS DAPFLTSPPS ARGRVCQKLL ELTIGLLRPL IHGPALGEAS 420
  421 PNYAANMVIN GVALGGFGVS MDQLGAQSTA TGAVDDVATY VHLATVVSAS EYKAASMRWW 480
  481 TAAWSLAREL KLGRELPPNA SQPGQDGERE NEGDNPSKRN QSLHGGNSNV NVTEEEREER 540
  541 RRLWWLLYAT DRHLALCYNR PLTLLDKECS QLLQPMNDDL WQAGDFPAAT YRAVGPPIEC 600
  601 TATGMFGYFL PLMTILGGII DLQQAREHPR YGLTFRSGPD LDQYIMAITQ QLDAYGQSLK 660
  661 DFEARYINSL ALAENEPPEN PHIDHLSPSG RSSSTVGSRV NESIVHTKMV VAYGTHIMHV 720
  721 LYVLLAGKWD PINLLEDHDM WISSESFLAA MSHAVGAAEA AADILEYDPD LSFMPFFFGI 780
  781 YLLQGSFLLL LAADKLQGDA NPSVVRACET IVRAHEACVV TLNTEYQRTF RKVMRSALAQ 840
  841 VRGRVPDDFG EQQQRRREVL SLYRWTGDGT GLALS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle