YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2569954
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	39	0.97
Non-Cytoplasmic	40	50	0.78
Transmembrane Helix	51	74	0.86
Cytoplasmic	75	92	0.86
Transmembrane Helix	93	114	0.91
Non-Cytoplasmic	115	138	0.93
Transmembrane Helix	139	158	0.94
Cytoplasmic	159	169	0.77
Transmembrane Helix	170	186	0.68
Non-Cytoplasmic	187	201	0.60
Transmembrane Helix	202	216	0.59
Cytoplasmic	217	217	0.03
Transmembrane Helix	218	234	0.62
Non-Cytoplasmic	235	238	0.29
Transmembrane Helix	239	263	0.70
Cytoplasmic	264	297	0.46
Transmembrane Helix	298	320	0.88
Non-Cytoplasmic	321	350	0.60
Transmembrane Helix	351	373	0.75
Cytoplasmic	374	403	0.81
Transmembrane Helix	404	423	0.55
Non-Cytoplasmic	424	427	0.48
Transmembrane Helix	428	445	0.42
Cytoplasmic	446	454	0.57
Transmembrane Helix	455	475	0.74
Non-Cytoplasmic	476	484	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRRNLLNGE ETMVLGPNPR PLSNVSLFGL VPVASWFVVR PFIDPVPHVP ALYTSIGFSI  60
   61 FAFLTALYLI PALGPTFIKS NLKGRDLLKT YESQGLICGA VYILSLILFI PFAFNHPLEP 120
  121 PPEAKPEGIS ILDFPHHKLS VYLSSIISLL IATFLGFLDD VFDIRWRHKL PIPIIASIPL 180
  181 LMVYYAERGN TNIVMPIPLR PLFGTLVNLG PLYYLYMILL STFSTNSINI LAGINGSEAS 240
  241 QALIIAISVI LNDLLYLPWR FGFRFPLHLL GNRAEVEFGG VYGAGMAKGS HILVERHLFS 300
  301 FYFMLPLVAV VSAFLYHNWY PARAFPGDTL CYLNGKAFAV VGIQAHFSKT LLLFFIPQVF 360
  361 NFVLSAPQLF GLVPCPRHRV PRFDPETNLL YPSKAQFLKP PSRLSAAVLH ILSTLGLVEL 420
  421 TVHPNGSILE VTNLTILNFF LVRLGPMNEK RLNQVLMASQ TAGSVLAFVI RYGLAGLVYD 480
  481 GDRR