YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|164428005, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRRPTLRL FAQCRTKPQL NHTWTPRRAA SSFQSSGSAR QAFSNSRNYL TLAAAGLAVA  60
   61 TTLGYKMAVE DPIRCDSPTL AERDQQIKRE KGVNDASPMR LRMEKFVKEQ QKEIVRALEE 120
  121 ADGTPFRVDE WQRKEGGGGI TCVLQEGKVF EKAGVGVSVV YGTLPKPAII KMRANHKNLA 180
  181 QEDDIPDSLE FFAAGLSLIV HPKNPMAPTV HLNYRYFETA NPDGSSGAWW FGGGSDLTPS 240
  241 YLFDEDAIQF HKSLKEVCDA HDKEYYPRFK KWCDEYFYNK HRGECRGIGG IFFDDLDETV 300
  301 SDKENTFAFV QDALKSFAPT YISIINKRKD MPYTEEEKRW QQIRRGKYVE FNLVHDRGTA 360
  361 FGLNTPGARV ESILMSLPLT ARWEYMYEPA PKSREARLVE VLKNPKDWV

Type	Start	End	Confidence
Signal Peptide	1	64	0.74
N-region	1	55
H-region	56	61
C-region	62	64
Cleavage Site	64	65
Non-Cytoplasmic	65	409	0.99