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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18376338
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALSLEEGS NFNVNVNHNG SSHHTRAVSD RPPPRKRRRI VISCTECHRR KQKCDRKLPC  60
   61 TNCISRHRQD DCQYESGAPT VKQKQWHQQQ PKRAQRTSSN ETEIVSPGAR LDENRGSSIT 120
  121 EGHWSGESST DDNNDHQHIA SNVANVANLG YSTTGASTST LSFIHKIETH SESSSIPHPS 180
  181 STLPLSNADG RASTSPTDIV NRYKSLIRQL PARIYIERLV DVYFRDFNWQ YSMLDRDIFD 240
  241 AQLEEWYKIP FNVFNNGGPG AIPPDLRVFP ALLFQVMSIV MLILPEKTGK RGREEVVTDG 300
  301 RDEEGSGSGS EKRKVGSRGT ANLGDKGGVD FEALKYTGNM TFEDLAKEYI LAGFVRAAFL 360
  361 KFVAMVPEAW HAIGTAIRDA QELGLHRSSL DPRPPPSATA ETILQNQWEI QRRRKVWLIL 420
  421 VTWDIHCGAT LGRPSTIDLT TNPPILPIDV ALPTTTATTM TTNCRSPTPI IPRSEENDPP 480
  481 TPLTRILWTY KITLQLVSIL ALEKEGPCPA SFSKVDLLHQ HLVDLENSIP SYFRLHNPDT 540
  541 RFDSLPQCYW IPWARALLPQ LTAFNFMALH RPYIFTRPLS RHLAVERGCL AMLRAQRTHF 600
  601 EILRREMRQN TFTLFFGTFD AIVLMGAVYI LFPPKEKETG TGEMVGEVVQ QFKWAEERFE 660
  661 EMKERNNPLA RQARGVVRGV GERLGRAVGV DLGQKGVGVG LVSEGTVAVN KPTAVAVGGR 720
  721 RKRLARQRVV KSVTTAAQNG LSTASLSTSV PSGIASRASS TTTPATATST TTTTTGITTP 780
  781 ESTAPPSFAQ GHFGAATSEI NTNTTITNNT FDASTTFSFT NTATEAIPID PSLNPALSPG 840
  841 VADWAAAAST IPSISLPSLP DDFNWTDISP IYATGDLVYN DLTGFVYDEF DSVVHDGSND 900
  901 LVQSGDGGGY ENGLGGVGLG NGLVTDIQSH IDMDMDIGAR DAISDGDMVG LMGVDQGDDN 960
  961 VGERQSQSQS QNEASWMFDG RGIGEGTCVW GLLNRY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle