YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18072843
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSLSNFTS DPFAISTVSF GIMAWVVAIA GAASSKQENF PHFSWWGISY QIVIILIIFV  60
   61 LYANNNIELY KFTLVGLVSI AFIYTTNSTN NLIYNSNSAG NLCCAAGCIL LSILNLIWIL 120
  121 YFGGHPESPT NQFIDSFSLR GQGHEQLGSG SHNHNANNAN NNIPIGAGNA IIGKGEMSPY 180
  181 DDRFAASGVN QPTSESLRLA SGPQMGNGPF TTTGAIINPN LQQPLSDSIG GSAHHTPINV 240
  241 NNNNNNNNNT GYMTSSHLTG LENFSSPHVP GSGTGAGLGV GAGRDLTHNS NGGGGSGGGP 300
  301 ASANNSNNTN KRNTIYTDSE TGTGITFRYK AKALYSYDAN PDDINEISFV KDEILEVDDI 360
  361 DGKWWQARRA NGQVGICPSN YVKLLDT

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.80
Transmembrane Helix	13	33	0.95
Cytoplasmic	34	42	0.75
Transmembrane Helix	43	63	0.94
Non-Cytoplasmic	64	68	0.77
Transmembrane Helix	69	88	0.87
Cytoplasmic	89	99	0.66
Transmembrane Helix	100	122	0.92
Non-Cytoplasmic	123	387	0.88