YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12718381
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLQRLARF LDRPLFPWKK LIIGFSLANY FIEGFLGYRQ YQVLKKTKVP KVLEHEVSQE  60
   61 VFDKSQAYGR AKAKFEFFSG IYGQIQNILF YQFDVLPKLW SFAGNLLVRF APARFSGEIS 120
  121 QSIVFVLSFV VISQILSLPT SLYHTFVLEE KFGFNKSSAK LWITDKIKSL FLTFVLTPPI 180
  181 LAGFLAIVQK TGNQFFYYLW VFVAGLQVVM ITIYPIFILP LFNKLSPLEE GELKSSVEDL 240
  241 AKKLKFPLSE LHVIDGSKRS AHSNAYFFGM PWKKHIVIYD TLIEKSETQE VVAVLAHELG 300
  301 HWKLGHTTSL FGISQAHFFA IFSLFSVFIN NNSLYADFGF HTVHPIIVGF LLFSDVLGPT 360
  361 DTLIKLGMNV LSRKFEFQAD EFANKLGYNA ELARSLIKLQ IQNLSTMDAD WMFATYHFSH 420
  421 PILTERLKAL NWQSTGKVEG KEKAKDGEEK IDVATATGRD EL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.81
Transmembrane Helix	16	37	0.62
Non-Cytoplasmic	38	122	0.78
Transmembrane Helix	123	147	0.84
Cytoplasmic	148	166	0.92
Transmembrane Helix	167	188	0.92
Non-Cytoplasmic	189	195	0.84
Transmembrane Helix	196	218	0.92
Cytoplasmic	219	306	0.93
Transmembrane Helix	307	329	0.84
Non-Cytoplasmic	330	340	0.80
Transmembrane Helix	341	364	0.79
Cytoplasmic	365	462	0.93