YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2326814
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTGFILDELT KLYYIGYAHL SFWNLFNDTT YLIITFAMGF RAMSVTPLNA KYSSEDWDKI  60
   61 SYRVLSCAAP FVWSRLLLYL ESQRFIGIML VILKHMMKES IVFFFLLFLI MIGFTQGFLG 120
  121 LDSADGKRDI TGPILGNLTI TVLGLGSFDV FEEFAPPYAA ILYYGYYFIV SVILLNILIA 180
  181 LYSTAYQKVI DNADDEYMAL MSQKTLRYIR APDEDVYVSP LNLIEVFMTP IFRILPPKRA 240
  241 KDLSYTVMTI VYSPFLLLIS VKETREARRI KYNRMKRLND DANEYDTPWD LTDGYLDDDD 300
  301 GLFSDNRNSG MRATQLKNSR SLKLQRTAEQ EDVHFKVPKK WYKNVKKCSP SFEQYDNDDT 360
  361 EDDAGEDKDE VKELTKKVEN LTAVITDLLE KLDIKDKKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.44
Transmembrane Helix	20	45	0.66
Cytoplasmic	46	59	0.46
Transmembrane Helix	60	80	0.74
Non-Cytoplasmic	81	99	0.39
Transmembrane Helix	100	121	0.91
Cytoplasmic	122	129	0.42
Transmembrane Helix	130	151	0.77
Non-Cytoplasmic	152	159	0.52
Transmembrane Helix	160	182	0.88
Cytoplasmic	183	399	0.54