YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLAH2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	138	0.92
Transmembrane Helix	139	161	0.80
Non-Cytoplasmic	162	181	0.91
Transmembrane Helix	182	200	0.97
Cytoplasmic	201	218	0.81
Transmembrane Helix	219	241	0.89
Non-Cytoplasmic	242	246	0.82
Transmembrane Helix	247	265	0.92
Cytoplasmic	266	280	0.86
Transmembrane Helix	281	300	0.90
Non-Cytoplasmic	301	306	0.76
Transmembrane Helix	307	326	0.95
Cytoplasmic	327	337	0.86
Transmembrane Helix	338	359	0.90
Non-Cytoplasmic	360	368	0.75
Transmembrane Helix	369	388	0.93
Cytoplasmic	389	394	0.88
Transmembrane Helix	395	414	0.86
Non-Cytoplasmic	415	424	0.74
Transmembrane Helix	425	446	0.90
Cytoplasmic	447	519	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNPRSVSPL VSPANHSDLL ENQRQSGSGD FSRLEKRIGA RKMKFHSKSM PRGAMFLDQE  60
   61 ASRNFHDKRY DLFRTMSGKL ERQISNLRGK PTESSLQDHK EITESLTADR YFDALQGPEL 120
  121 ETLKEKEKIV LPEDKTWPFL LRFPITSYGM CLGVSSQAIM WKTLATTEAE KFLHVTQVIN 180
  181 HVLWWISLLL LLAVSITYLF KTILFFEAVR REFRHPIRVN FFFAPLISIL FLALGIPHSI 240
  241 ISHLPSTLWY FLMAPILFLE MKIYGQWMSG GQRRLSKVAN PTNHLSIVGN FAGALLGASM 300
  301 GLKEGPIFFF AIGLAYYLVL FVTLYQRLPT NETLPKELHP VFFLFVAAPA VASMAWTKIS 360
  361 ASFDLGSRLA YFISLFLYFS LVCRINLFRG FKFSLAWWAY TFPMTAVASA TIKYSDEVTG 420
  421 VATKILSVVM SGAATLTVIA VLGLTVMHAF VQRDLFPNDV VIAISAEQPK QKRWFKHLTK 480
  481 ESYGNNERCP KILDPEDNQI DLESPPLVNV DSSTVQNSN