YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18597350
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPNAPPPLP HSSPSSSPGG CGEGVCSRGP GSGAADGMEE PGRNSSQNGT LSEGQGSAIL  60
   61 ISFIYSVVCL VGLCGNSMVI YVILRYAKMK TATNIYILNL AIADELLMLS VPFLVTSTLL 120
  121 RHWPFGALLC RLVLSVDAVN MFTSIYCLTV LSVDRYVAVE HPIKAARYRR PTVAKVVNLG 180
  181 VWVLSLLVIL PIVVFSRTAA NSDGTVACNM LMPEPAQRWL VGFVLYTFLM GFLLPVGAIC 240
  241 LCYVLIIAKM RMVPSRPAGS TQRSERKITL MVMMVVMVFV ICWMPFYVVQ LVNVFAEQDD 300
  301 ATVSQLSVIL GYANSCANPI LYGFLSDNFK RSFQRILCLS WMDNAAEEPV DYYATALKSR 360
  361 AYSVEDFQPE NLESGGVFRN GTCASRISTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	60	0.91
Transmembrane Helix	61	84	0.90
Cytoplasmic	85	94	0.86
Transmembrane Helix	95	116	0.87
Non-Cytoplasmic	117	132	0.69
Transmembrane Helix	133	153	0.77
Cytoplasmic	154	175	0.81
Transmembrane Helix	176	195	0.94
Non-Cytoplasmic	196	223	0.90
Transmembrane Helix	224	247	0.94
Cytoplasmic	248	267	0.96
Transmembrane Helix	268	289	0.94
Non-Cytoplasmic	290	305	0.88
Transmembrane Helix	306	325	0.77
Cytoplasmic	326	390	0.80