YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABCC8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.90
Transmembrane Helix	33	52	0.92
Cytoplasmic	53	72	0.84
Transmembrane Helix	73	94	0.93
Non-Cytoplasmic	95	103	0.83
Transmembrane Helix	104	125	0.92
Cytoplasmic	126	134	0.73
Transmembrane Helix	135	154	0.88
Non-Cytoplasmic	155	166	0.78
Transmembrane Helix	167	190	0.83
Cytoplasmic	191	304	0.97
Transmembrane Helix	305	324	0.92
Non-Cytoplasmic	325	350	0.85
Transmembrane Helix	351	368	0.92
Cytoplasmic	369	427	0.85
Transmembrane Helix	428	452	0.70
Non-Cytoplasmic	453	453	0.44
Transmembrane Helix	454	477	0.85
Cytoplasmic	478	535	0.97
Transmembrane Helix	536	559	0.91
Non-Cytoplasmic	560	574	0.84
Transmembrane Helix	575	597	0.86
Cytoplasmic	598	1000	0.99
Transmembrane Helix	1001	1022	0.88
Non-Cytoplasmic	1023	1063	0.90
Transmembrane Helix	1064	1086	0.89
Cytoplasmic	1087	1100	0.79
Transmembrane Helix	1101	1121	0.58
Non-Cytoplasmic	1122	1154	0.67
Transmembrane Helix	1155	1178	0.85
Cytoplasmic	1179	1249	0.78
Transmembrane Helix	1250	1269	0.78
Non-Cytoplasmic	1270	1277	0.62
Transmembrane Helix	1278	1297	0.78
Cytoplasmic	1298	1582	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLAFCGTEN HSAAYRVDQG VLNNGCFVDA LNVVPHVFLL FITFPILFIG WGSQSSKVHI  60
   61 HHSTWLHFPG HNLRWILTFI LLFVLVCEIA EGILSDGVTE SRHLHLYMPA GMAFMAAITS 120
  121 VVYYHNIETS NFPKLLIALL IYWTLAFITK TIKFVKFYDH AIGFSQLRFC LTGLLVILYG 180
  181 MLLLVEVNVI RVRRYVFFKT PREVKPPEDL QDLGVRFLQP FVNLLSKGTY WWMNAFIKTA 240
  241 HKKPIDLRAI GKLPIAMRAL TNYQRLCLAF DAQARKDTQS QQGARAIWRA LCHAFGRRLV 300
  301 LSSTFRILAD LLGFAGPLCI FGIVDHLGKE NHVFQPKTQF LGVYFVSSQE FLGNAYVLAV 360
  361 LLFLALLLQR TFLQASYYVA IETGINLRGA IQTKIYNKIM HLSTSNLSMG EMTAGQICNL 420
  421 VAIDTNQLMW FFFLCPNLWA MPVQIIVGVI LLYYILGVSA LIGAAVIILL APVQYFVATK 480
  481 LSQAQRSTLE YSNERLKQTN EMLRGIKLLK LYAWENIFCS RVEKTRRKEM TSLRAFAVYT 540
  541 SISIFMNTAI PIAAVLITFV GHVSFFKESD FSPSVAFASL SLFHILVTPL FLLSSVVRST 600
  601 VKALVSVQKL SEFLSSAEIR EEQCAPREPA PQGQAGKYQA VPLKVVNRKR PAREEVRDLL 660
  661 GPLQRLTPST DGDADNFCVQ IIGGFFTWTP DGIPTLSNIT IRIPRGQLTM IVGQVGCGKS 720
  721 SLLLATLGEM QKVSGAVFWN SSLPDSEGED PSNPERETAA DSDARSRGPV AYASQKPWLL 780
  781 NATVEENITF ESPFNKQRYK MVIEACSLQP DIDILPHGDQ TQIGERGINL SGGQRQRISV 840
  841 ARALYQHTNV VFLDDPFSAL DVHLSDHLMQ AGILELLRDD KRTVVLVTHK LQYLPHADWI 900
  901 IAMKDGTIQR EGTLKDFQRS ECQLFEHWKT LMNRQDQELE KETVMERKAP EPSQGLPRAM 960
  961 SSRDGLLLDE DEEEEEAAES EEDDNLSSVL HQRAKIPWRA CTKYLSSAGI LLLSLLVFSQ1020
 1021 LLKHMVLVAI DYWLAKWTDS ALVLSPAARN CSLSQECALD QSVYAMVFTV LCSLGIALCL1080
 1081 VTSVTVEWTG LKVAKRLHRS LLNRIILAPM RFFETTPLGS ILNRFSSDCN TIDQHIPSTL1140
 1141 ECLSRSTLLC VSALAVISYV TPVFLVALLP LAVVCYFIQK YFRVASRDLQ QLDDTTQLPL1200
 1201 LSHFAETVEG LTTIRAFRYE ARFQQKLLEY TDSNNIASLF LTAANRWLEV RMEYIGACVV1260
 1261 LIAAATSISN SLHRELSAGL VGLGLTYALM VSNYLNWMVR NLADMEIQLG AVKRIHTLLK1320
 1321 TEAESYEGLL APSLIPKNWP DQGKIQIQNL SVRYDSSLKP VLKHVNALIS PGQKIGICGR1380
 1381 TGSGKSSFSL AFFRMVDMFE GRIIIDGIDI AKLPLHTLRS RLSIILQDPV LFSGTIRFNL1440
 1441 DPEKKCSDST LWEALEIAQL KLVVKALPGG LDAIITEGGE NFSQGQRQLF CLARAFVRKT1500
 1501 SIFIMDEATA SIDMATENIL QKVVMTAFAD RTVVTIAHRV HTILSADLVM VLKRGAILEF1560
 1561 DKPEKLLSQK DSVFASFVRA DK