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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RBOHE_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSPLSFST SSSFSHADGI DDGVELISSP FAGGAMLPVF LNDLSRNSGE SGSGSSWERE  60
   61 LVEVTLELDV GDDSILVCGM SEAASVDSRA RSVDLVTARL SRNLSNASTR IRQKLGKLLR 120
  121 SESWKTTTSS TAGERDRDLE RQTAVTLGIL TARDKRKEDA KLQRSTSSAQ RALKGLQFIN 180
  181 KTTRGNSCVC DWDCDCDQMW KKVEKRFESL SKNGLLARDD FGECVGMVDS KDFAVSVFDA 240
  241 LARRRRQKLE KITKDELHDF WLQISDQSFD ARLQIFFDMA DSNEDGKITR EEIKELLMLS 300
  301 ASANKLAKLK EQAEEYASLI MEELDPENFG YIELWQLETL LLQRDAYMNY SRPLSTTSGG 360
  361 VSTPRRNLIR PRHVVQKCRK KLQCLILDNW QRSWVLLVWV MLMAILFVWK FLEYREKAAF 420
  421 KVMGYCLTTA KGAAETLKLN MALVLLPVCR NTLTWLRSTR ARACVPFDDN INFHKAIAIG 480
  481 ILVHAGTHLA CDFPRIINSS PEQFALIASA FNGTKPTFKD LMTGAEGITG ISMVILTTIA 540
  541 FTLASTHFRR NRVRLPAPLD RLTGFNAFWY THHLLVVVYI MLIVHGTFLF FADKWYQKTT 600
  601 WMYISVPLVL YVAERSLRAC RSKHYSVKIL KVSMLPGEVL SLIMSKPPGF KYKSGQYIFL 660
  661 QCPTISRFEW HPFSITSAPG DDQLSVHIRT LGDWTEELRR VLTVGKDLST CVIGRSKFSA 720
  721 YCNIDMINRP KLLVDGPYGA PAQDYRSYDV LLLIGLGIGA TPFISILKDL LNNSRDEQTD 780
  781 NEFSRSDFSW NSCTSSYTTA TPTSTHGGKK KAVKAHFYWV TREPGSVEWF RGVMEEISDM 840
  841 DCRGQIELHN YLTSVYDEGD ARSTLIKMVQ ALNHAKHGVD ILSGTRVRTH FARPNWKEVF 900
  901 SSIARKHPNS TVGVFYCGIQ TVAKELKKQA QDMSQKTTTR FEFHKEHF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle