YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55775306, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	65	0.76
Transmembrane Helix	66	88	0.87
Cytoplasmic	89	95	0.65
Transmembrane Helix	96	117	0.78
Non-Cytoplasmic	118	141	0.84
Transmembrane Helix	142	163	0.92
Cytoplasmic	164	171	0.75
Transmembrane Helix	172	195	0.90
Non-Cytoplasmic	196	202	0.79
Transmembrane Helix	203	221	0.85
Cytoplasmic	222	233	0.89
Transmembrane Helix	234	255	0.88
Non-Cytoplasmic	256	272	0.87
Transmembrane Helix	273	296	0.80
Cytoplasmic	297	307	0.72
Transmembrane Helix	308	331	0.84
Non-Cytoplasmic	332	384	0.94
Transmembrane Helix	385	405	0.95
Cytoplasmic	406	438	0.92
Transmembrane Helix	439	460	0.91
Non-Cytoplasmic	461	466	0.83
Transmembrane Helix	467	489	0.91
Cytoplasmic	490	549	0.95
Transmembrane Helix	550	572	0.89
Non-Cytoplasmic	573	621	0.75
Transmembrane Helix	622	641	0.93
Cytoplasmic	642	649	0.51
Transmembrane Helix	650	667	0.60
Non-Cytoplasmic	668	673	0.54
Transmembrane Helix	674	689	0.90
Cytoplasmic	690	700	0.74
Transmembrane Helix	701	723	0.91
Non-Cytoplasmic	724	760	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSHHQEVQ EQGHGDGEEE EQDNSQITSP LLRSSMRLGS PEENSPVEQV ALTVPVGDDP  60
   61 ATPVLTFRIW VLGTASCVVL SFLNTFFWYR KEPLTVTAIS AQIAVVPLGR LMAAALPERV 120
  121 FFRGRPWEFT LNPGPFNVKE HVLITIFANA GAGSVFAINV ITAVRVFYGK RISFFVSLLV 180
  181 VLTSQVLGFG WAGIFRRYLV EPAAMWWPSN LVQVSLFRAL HEKERRSKGG MTRTQFFLVA 240
  241 FVCSFAYYIF PGYLFQMLTS LSWICWIFPK SVLAQQLGSG LHGLGIGAIG LDWSSISSYL 300
  301 GSPLASPWFA TANIAAGFFI YIYVITPIAY WINLYKAQNF PIFSDGLFTV TGQKYNISTI 360
  361 IDSQFHFDTK AYEKNGPLYI STFFSISYGL GFACLTATVV HVLLFHGSEI WQLSRSAFQD 420
  421 KKMDIHTKLM KRYKQVPEWW FISILIASVA ITMFTCEYYI EQLQLPWWGV LLACALAIFF 480
  481 TLPIGIVTAT TNQTPGLNII TEYIMGYLYP GRPVANMCFK VYGYIGPQQA LAFLQDFKLG 540
  541 HYMKIPPRTM FMAQVVGTLI AAFVYLGTAW WLMDTIPNIC NTELLPPGSP WTCPYDHLFY 600
  601 DASVIWGLIG PRRIFGDLGT YSAVNWFFLG GAIAPLLVWF AHKAFPGQKW ILLVNMPVLI 660
  661 AGISQMPPAT SVNYTAWIFV AFLSGYVVYK YRRDWWERHN YLLSGALDAG LAFMAVLLYL 720
  721 CLGLEKISLN WWGNDLDGCP LASCPIAEGI TVQGCPVASA