YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113594690, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	64	0.49
Transmembrane Helix	65	87	0.81
Cytoplasmic	88	92	0.52
Transmembrane Helix	93	116	0.76
Non-Cytoplasmic	117	139	0.59
Transmembrane Helix	140	159	0.75
Cytoplasmic	160	165	0.63
Transmembrane Helix	166	186	0.76
Non-Cytoplasmic	187	206	0.66
Transmembrane Helix	207	224	0.77
Cytoplasmic	225	239	0.82
Transmembrane Helix	240	259	0.90
Non-Cytoplasmic	260	275	0.88
Transmembrane Helix	276	300	0.83
Cytoplasmic	301	311	0.80
Transmembrane Helix	312	335	0.86
Non-Cytoplasmic	336	387	0.96
Transmembrane Helix	388	409	0.93
Cytoplasmic	410	442	0.92
Transmembrane Helix	443	464	0.91
Non-Cytoplasmic	465	470	0.82
Transmembrane Helix	471	493	0.91
Cytoplasmic	494	553	0.89
Transmembrane Helix	554	576	0.89
Non-Cytoplasmic	577	625	0.66
Transmembrane Helix	626	646	0.91
Cytoplasmic	647	652	0.43
Transmembrane Helix	653	670	0.48
Non-Cytoplasmic	671	674	0.59
Transmembrane Helix	675	693	0.89
Cytoplasmic	694	704	0.81
Transmembrane Helix	705	727	0.91
Non-Cytoplasmic	728	763	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSHQEDRE EEEEHSHGDD EITAPFLRPS TSRGSPELEE EENSPIEQVA LTVPVSDEPE  60
   61 TPVLTFRMWV LGTASCAVLS FLNQFFWYRK EPLTITAISA QIAVVPLGRL MAAALPERAF 120
  121 FRGRPWEFTL NPGPFNVKEH VLITIFANSG AGTVYAIHVI TAVRVFYGKH ISFFVSLLVV 180
  181 LTTQVVDDQV LGFGWAGIFR RYLVEPAAMW WPSNLVQVSL FRALHEKEAR SKGGLTRNQF 240
  241 FLVAFICSFA YYIFPGYLFQ MLTSLSWICW VFPHSVLAQQ LGSGLSGLGI GAIGLDWSTV 300
  301 SSYLGSPLAS PWFATANVAA GFFFIMYIIT PIAYWFNFYK AQNFPIFSDG LFTSTGQKYN 360
  361 ISSIVDSHFH FDTKAYEKNG PLYLSTFFAV TYGVGFASLT ATIVHVLLFH GSEIWQLSKS 420
  421 AFQEKRMDIH TKLMRRYKQV PEWWFVCILI ANIAVTIFAC EYYIEQLQLP WWGVLLACAI 480
  481 AFFFTLPIGI ITATTNQTPG LNIITEYIMG YLYPGRPVAN MCFKVYGYIS MSQALTFLQD 540
  541 FKLGHYMKIP PRTMFMAQVV GTLIAAFVYI GTAWWLMETI PNICNTELLP SDSPWTCPGD 600
  601 HVFYDASVIW GLISPRRIFG DLGTYSAVNW FFLGGAIAPV LVWFAHKAFP NQNWILLINM 660
  661 PVLIGATGQM PPATAVNYTT WILVGFLSGY VVYRYRRDWW ERHNYLLSGA LDAGLAFMAV 720
  721 LIYLCLGLEN ISLNWWGNDL DGCPLASCPT AKGVVVDGCP VYT