YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54291339
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.49
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	338	0.71
Transmembrane Helix	339	358	0.55
Cytoplasmic	359	502	0.91
Transmembrane Helix	503	522	0.92
Non-Cytoplasmic	523	535	0.85
Transmembrane Helix	536	557	0.89
Cytoplasmic	558	572	0.89
Transmembrane Helix	573	594	0.92
Non-Cytoplasmic	595	617	0.95
Transmembrane Helix	618	639	0.96
Cytoplasmic	640	648	0.80
Transmembrane Helix	649	667	0.69
Non-Cytoplasmic	668	680	0.59
Transmembrane Helix	681	699	0.79
Cytoplasmic	700	726	0.76
Transmembrane Helix	727	745	0.87
Non-Cytoplasmic	746	751	0.68
Transmembrane Helix	752	772	0.87
Cytoplasmic	773	1519	0.90
Transmembrane Helix	1520	1543	0.87
Non-Cytoplasmic	1544	1571	0.80
Transmembrane Helix	1572	1591	0.81
Cytoplasmic	1592	1605	0.65
Transmembrane Helix	1606	1624	0.74
Non-Cytoplasmic	1625	1688	0.52
Transmembrane Helix	1689	1713	0.87
Cytoplasmic	1714	1765	0.74
Transmembrane Helix	1766	1785	0.69
Non-Cytoplasmic	1786	1795	0.78
Transmembrane Helix	1796	1817	0.90
Cytoplasmic	1818	1833	0.86
Transmembrane Helix	1834	1853	0.95
Non-Cytoplasmic	1854	1860	0.66
Transmembrane Helix	1861	1882	0.87
Cytoplasmic	1883	1900	0.86
Transmembrane Helix	1901	1923	0.90
Non-Cytoplasmic	1924	1959	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGGARRP DFSSAASPSP SPAGAAGRRL LRTQTVGNLG ESIFDSEVVP SSLVEIAPIL  60
   61 RVANEVEATN PRVAYLCRFY AFEKAHRLDP TSNGRGVRQF KTALLQRLER ENDPTLKGRV 120
  121 HQSDAREMQR FYREYYKKYI QALQNAADKA DRALLTKAYQ TAAVLFEVLK AVNVSQSVEV 180
  181 DQAILDTHNK VEEKKKLYVP YNILPLDPES TYQPIMQYPE IQAAVNALRN IRGLPWPKEH 240
  241 EKKPDEKKTG KDLLDWLQAM FGFQKDNVSN QREHLILLLA NVHIRQSPKT EQQAKLDDRA 300
  301 LDAVMKKLFK NYKKWCKYLG RKSSLWLPTI QQEVQQRKLL YMGLYLLIWG EAANLRFMPE 360
  361 CLCYIYHHMA FELYGMLAGN VSPMTGENVK PAYGGDEEAF LMKVVTPIYK VIEKEAERSK 420
  421 TIKSKHSHWR NYDDLNEYFW SVDCFRLGWP MRADADFFKT PEDAYPSRLN GENRSAGNVH 480
  481 WMGKINFVEI RSFWHIFRSF DRMWIFLILS LQAMIIIAWN GGTPSDIFDV GVFKQVLSIF 540
  541 ITAAVLKLGQ AILDIVFGWK ARRSMSFAVK LRYVLKLISS SAWVVILPVT YAYTWDSPTG 600
  601 LARIIKSWLG NGQNQPSLYI LAVVIYLAPN MLAAMLFLFP FLRRFLESSN VKVITFIMWW 660
  661 SQPRLFVGRG MHEGAFSLFK YTMFWVLLLA MKLTVSFYIE IKPLVQPTKD IMKEPIRDFQ 720
  721 WHEFFPRANN NIGVVIALWA PIILVYFMDT QIWYALFSTL IGGIYGAYRR LGEIRTLGML 780
  781 RSRFESLPEA FNEHLIPSDS HKSKGLRAAF TGKPSKTSGD EQEKEKIAAR FAQMWNLIIT 840
  841 SFREEDLIDN REMDLLLVPY CKDRELNIFQ WPPFLLASKI PIALDMAADS GGKDRDLKKR 900
  901 MGSDPYFSYA IRECYGSFKN IINTLVFGQR EKIVIQQIFT IVDEHIEGGS LIKDLNMRSL 960
  961 PALSKKFIEL LELLQKNKEE DLGQVVILFQ DMLEVVTRDI MDEQDQLGGL LDSVHGGNRK1020
 1021 HEGMTSLDQQ DQLFTKAIRF PVEESNAWTE KIKRLHLLLT VKESAMDVPT NLDARRRISF1080
 1081 FANSLFMEMP NAPKVRHMLP FSVLTPYYKE DVLFSSHNLE EPNEDGVSIL FYLQKIYPDE1140
 1141 WKNFLDRVDR KSEEELREDE TLEEELRLWA SYRGQTLTRT VRGMMYYRKA LELQAFLDMA1200
 1201 KDDDLMEGYR ATELMSEDSQ LMTQCKAIAD MKFTYVVSCQ QYGIQKRSGE ACAHDILRLM1260
 1261 TVYPSLRVAY IDEVEAPSQD RNKKTDKVYY SALVKASVTK PNEPGQSLDQ VIYKIKLPGN1320
 1321 AILGEGKPEN QNHAIIFTRG ECLQTIDMNQ EHYMEEALKM RNLLDEFLKK HDGVRYPSIL1380
 1381 GVREHIFTGS VSSLAWFMSN QETSFVTIGQ RVLANPLRVR FHYGHPDIFD RLFHLTRGGV1440
 1441 SKASKIINLS EDIFAGFNST LREGNVTHHE YMQVGKGRDV GLNQIALFEA KIANGNGEQT1500
 1501 LSRDIYRLGH RFDFFRMLSC YYTTIGFYFS TMITVWTVYV FLYGRLYLVL SGLDQALATG1560
 1561 KKFVHNAPLQ VALASESFVQ LGFLMALPMM MEIGLERGFR TALSDFVLMQ LQLASVFFTF1620
 1621 SLGTKTHYYG RTLLHGGAEY RATGRGFVVF HAKFADNYRL YSRSHFVKGI ELMILLVVYE1680
 1681 IFGQSYRGAI TYIFITVSMW FMVGTWLFAP FLFNPSGFEW QKIVDDWTDW NKWISNRGGI1740
 1741 GVAPTKSWES WWEKEQEPLR YSGKRGTILE ILLALRFFVY QYGLVYHLNI TKHTRSVLVY1800
 1801 CFSWVVIFVI LLVMKTVSVG RRRFSAEFQL VFRLIKGLIF ITFVAIVVIL IAIPHMTVLD1860
 1861 IFVCILAFMP TGWGLLLIAQ AIKPAVQAIG LWGSIKALAR GYEILMGLLL FTPIAFLAWF1920
 1921 PFVSEFQTRM LFNQAFSRGL QISRILGGHK KDRSTRNKE