YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RHGB_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.97
Transmembrane Helix	17	38	0.95
Non-Cytoplasmic	39	73	0.96
Transmembrane Helix	74	94	0.89
Cytoplasmic	95	101	0.79
Transmembrane Helix	102	123	0.91
Non-Cytoplasmic	124	144	0.91
Transmembrane Helix	145	165	0.92
Cytoplasmic	166	172	0.74
Transmembrane Helix	173	191	0.92
Non-Cytoplasmic	192	202	0.77
Transmembrane Helix	203	222	0.94
Cytoplasmic	223	235	0.93
Transmembrane Helix	236	260	0.79
Non-Cytoplasmic	261	269	0.84
Transmembrane Helix	270	292	0.90
Cytoplasmic	293	301	0.83
Transmembrane Helix	302	321	0.90
Non-Cytoplasmic	322	327	0.75
Transmembrane Helix	328	350	0.89
Cytoplasmic	351	361	0.92
Transmembrane Helix	362	384	0.89
Non-Cytoplasmic	385	411	0.95
Transmembrane Helix	412	432	0.95
Cytoplasmic	433	600	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDEHKLPL SKRKESIIFM MILFAFQVFM VVLFSVWVRY SKNEVNYSTL TPEQLQELEA  60
   61 TGGVVQEEVT NIYGYFRDIN IMIFFGFGFL MTFLRRYGYS ALGYTFIISA LVAQWSVLIY 120
  121 GFFETVDHKN DHGGDYASTF EMSQTVLLQG LFCAGAVMIS YGAVLGRVTP LQMLVVGIFE 180
  181 PIFYFLNMFI GEMNLEAIDV GGGMYIHLFG SVFGLTIAWF LTDKKSKDCE DNSPSYTGDY 240
  241 FAMAGTLFLW MMWPSFNAAI APLGEPQFRA IANTFLSLTA STIATFIVTR LFGHLGHKID 300
  301 MVHVQNSSLA GGVVQGCLAH MNINPGGAIG MGFLAGVISV IGYLFISPFL QRRFNIQDTC 360
  361 GIHNLHFMPG FIGSIAACIA AWKGLNDRSL YNPIEFNQIF RAGEDQARNN AAATFISIGI 420
  421 AIAGGLFVGM ILKALKKVGG LKAKQYYQDS AFWHVPIDYP KDVEYVVEQN NLPMPTTDNG 480
  481 DNVVGGGVEM KKHNNNNNKK ENGYRRDLIR LLETLVRNEQ STDSSYSDSD SSDEEEKERR 540
  541 IRKLAKKSYR RSKKSHSEHQ PQHQPEESTF NNNNNNNNNN ATAETTDNGG SSTNSPTSKV 600
  601