YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRS24_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGPLSFRR LSSIRHRKKG SAVKDDSAQT STPSSPPPPL PIHAGGSAVG ATGKAKKKTG  60
   61 GARLWMRFDR TGAMEVVECD KSTIIKRASV PARDLRILGP VFSHSSNILA REKAIVVNLE 120
  121 VIKAIVTAEE VLLLDPLRPE VLPFVERLKQ QFPQRNGNEN ALQASANVQS PLDPEAAEGL 180
  181 QSELPFEFQV LEIALEVVCS FVDKSVAALE TEAWPVLDEL TKNVSTENLE YVRSLKSNLT 240
  241 RLLARVQKVR DELEHLLDDN EDMADLYLTR KWIQNQQTEA ILAGTASNSI ALPAHNTSNL 300
  301 HRLTSNRSAS MVTSNTEEDD VEDLEMLLEA YFMQLDGMRN KILTVREYID DTEDYVNIQL 360
  361 DNQRNELIQL QLTLTIASFA IAAETLLASL FGMNIPCPLY SIHGVFGYFV WSVTALCIVL 420
  421 FMVTLGYARW KKLLGS

Type	Start	End	Confidence
Cytoplasmic	1	371	0.69
Transmembrane Helix	372	393	0.87
Non-Cytoplasmic	394	404	0.63
Transmembrane Helix	405	428	0.89
Cytoplasmic	429	436	0.71