YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD5A_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYSNKMSKV ITGKQYSWSE LAKHNTENDC WVAVDGKVYD ITRWVPLHPG GKEVLLLAAG  60
   61 RDVTNLFESY HPMSDKPTSI LKNYEIGYIS SYEHPKFVQK SDFYKTLKER VRKHFKATDQ 120
  121 DPQMAVSIFS RLALVYLLVF VTYYLAHYTS NNFYLNCFLA IVYALCNSLF SMHMMHDSCH 180
  181 AAISHYPGVW KWMGASFDFV TGASFLSWCH QHVIGHHIYT NVRNADPDLG QGEVDFRIVT 240
  241 PFQTRSWYHK YQHIYAPLLY GIYTLKYRTQ DWEAFVKDGK NGAIRVSVAT NFDKAAYVIG 300
  301 KLSFVFFRFI LPLRYHSFTD LICYFLIAEF VFGWYLTINF QVSHVAEDLK FFATPERPDE 360
  361 PSQINEDWAI LQLKTTQDYG HGSLLCTFFS GSLNHQVVHH LFPSIAQDFY PQLVPIVKEV 420
  421 CKEHNITYHI KPNFTEAIMS HINYLYKMGN DPDYVKKPLA SKDD

Type	Start	End	Confidence
Cytoplasmic	1	126	0.87
Transmembrane Helix	127	146	0.90
Non-Cytoplasmic	147	152	0.69
Transmembrane Helix	153	174	0.85
Cytoplasmic	175	316	0.49
Transmembrane Helix	317	338	0.71
Non-Cytoplasmic	339	464	0.67