YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD5B_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMETNNENKE KLKLYTWDEV SKHNQKNDLW IIVDGKVYNI TKWVPLHPGG EDILLLSAGR  60
   61 DATNLFESYH PMTDKHYSLI KQYEIGYISS YEHPKYVEKS EFYSTLKQRV RKHFQTSSQD 120
  121 PKVSVGVFTR MVLIYLFLFV TYYLSQFSTD RFWLNCIFAV LYGVANSLFG LHTMHDACHT 180
  181 AITHNPMTWK ILGATFDLFA GASFYAWCHQ HVIGHHLYTN VRNADPDLGQ GEIDFRVVTP 240
  241 YQARSWYHKY QHIYAPILYG VYALKYRIQD HEIFTKKSNG AIRYSPISTI DTAIFILGKL 300
  301 VFIISRFILP LIYNHSFSHL ICFFLISELV LGWYLAISFQ VSHVVEDLQF MATPEIFDGA 360
  361 DHPLPTTFNQ DWAILQVKTT QDYAQDSVLS TFFSGGLNLQ VIHHCFPTIA QDYYPQIVPI 420
  421 LKEVCKEYNV TYHYKPTFTE AIKSHINYLY KMGNDPDYVR KPVNKND

Type	Start	End	Confidence
Cytoplasmic	1	125	0.80
Transmembrane Helix	126	145	0.91
Non-Cytoplasmic	146	151	0.69
Transmembrane Helix	152	173	0.89
Cytoplasmic	174	187	0.71
Transmembrane Helix	188	209	0.85
Non-Cytoplasmic	210	251	0.73
Transmembrane Helix	252	266	0.33
Cytoplasmic	267	286	0.49
Transmembrane Helix	287	309	0.81
Non-Cytoplasmic	310	315	0.43
Transmembrane Helix	316	337	0.89
Cytoplasmic	338	467	0.52