YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGKKNSDA GDRLTNSDTR TGSSELNAMM KPSLSSMKTM GLLLAVLMVA SVMFSLSVVL  60
   61 RDPPSDDVIE TEAASRVLQS RLHQDGGLSE KKAQLGNINL VPSFDKESCL SRYEASLYRK 120
  121 ESPFKQSSYL DYRLQRYEDL HRRCGPFTRS YNLTLDKLKS GDRSDGEVSG CRYVIWLNSN 180
  181 GDLGNRMLSL ASAFLYALLT NRFLLVELGV DMADLFCEPF PNTTWFLPPE FPLNSHFNEQ 240
  241 SLLRNSGNPM VAYRHVVRDS SDQQKLFFCE DSQVLLEETP WLILKADSFF LPSLFSVSSF 300
  301 KQELQMLFPE KDTAFHFLSQ YLFHPTNVVW GLITRYYNAY LAKADQRIGI YIGVSESGNE 360
  361 QFQHLIDQIL ACGTRHKLLP EVDKQRNLPS SQVLNRKSKA VFISSSSPGY FKSIRDVYWE 420
  421 NPTVMGEIIS VHKPSYKDYQ KTPRNMESKR AWAEIYLLSC SDALVVTGLW SSLVEVAHGL 480
  481 GGLKPWVLNK AENGTAHEPY CVKARSIEPC SQATLFHGCK D

Type	Start	End	Confidence
Cytoplasmic	1	38	0.94
Transmembrane Helix	39	60	0.89
Non-Cytoplasmic	61	521	0.96