YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15223628, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPSTSMWA TLQKKRWPLM ILLVLSVSTV GMILVRSTFD SCSVSGKRCS REKEDNSDIK  60
   61 IQSVSGSLNP LEFMKSKLVL LVSHELSLSG GPLLLMELAF LLRGVESEVV WITNQKPVEE 120
  121 DEVIKVLEHK MLDRGVQVIS AKSQKAIDTA LKSDLVVLNT AVAGKWLDAV LKDNVPKVLP 180
  181 KVLWWIHEMR GHYFKPDLVK HLPFVAGAMI DSHATAEYWK NRTHDRLGIK MPKTYVVHLG 240
  241 NSKELMEVAE DSFAKNVLRE QVRESLGVRN EDILFGIINS VSRGKGQDLF LRAFHESLKV 300
  301 IKETKKLEVP TMHAVVVGSD MSAQTKFETE LRNFVQEMKL QKIVHFVNKT MKVAPYLAAI 360
  361 DVLVQNSQAR GECFGRITIE AMAFKLPVLG TAAGGTMEIV VNRTTGLLHN TGKDGVLPLA 420
  421 KNIVKLATNV KMRNTMGKKG YERVKEMFLE HHMSHRIASV LREVLQHAKI HSRTTNSDH

Type	Start	End	Confidence
Signal Peptide	1	37	0.71
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	479	0.99