YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51890725, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQLKGRNRC NRAVRHLKIQ GKMWLKNLKS GLEQIRESQV RGTRKNFLHD GSFHEAVAPV  60
   61 LAVAQCFCLM PVCGISAPTY RGLSFNRRSW RFWYSSLYLC STSVDLAFSI RRVAHSVLDV 120
  121 RSVEPIVFHV SILIASWQFL NLAQLWPGLM RHWAAVERRL PGYTCCLQRA RPARRLKLVA 180
  181 FVLLVVSLME HLLSIISVVY YDFCPRRSDP VESYLLGASA QLFEVFPYSN WLAWLGKIQN 240
  241 VLLTFGWSYM DIFLMMLGMG LSEMLARLNR SLEQQVRQPM PEAYWTWSRT LYRSIVELIR 300
  301 EVDDAVSGIM LISFGSNLYF ICLQLLKSIN TMPSSAHAVY FYFSLLFLLS RSTAVLLFVS 360
  361 AINDQAREPL RLLRLVPLKG YHPEVFRFAA ELASDQVALT GLKFFNVTRK LFLAMAGTVA 420
  421 TYELVLIQFH EDKKTWDCSP FNLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	55	0.73
Transmembrane Helix	56	80	0.68
Cytoplasmic	81	89	0.86
Transmembrane Helix	90	110	0.84
Non-Cytoplasmic	111	125	0.81
Transmembrane Helix	126	149	0.83
Cytoplasmic	150	177	0.93
Transmembrane Helix	178	200	0.90
Non-Cytoplasmic	201	240	0.85
Transmembrane Helix	241	261	0.86
Cytoplasmic	262	304	0.81
Transmembrane Helix	305	326	0.79
Non-Cytoplasmic	327	338	0.69
Transmembrane Helix	339	362	0.88
Cytoplasmic	363	444	0.74